Analysis of interatomic Contacts of Structural Units in PDB entry:
6YAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YAY entry

There are 4 chains in PDB entry 6YAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 242
B
 ALA 2SER 240
C
 ILE 17GLN 60
D
 ALA 28GLN 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6YAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
43 49Right-handed 310
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
67 72Right-handed 310
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
94 99Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
130 140Right-handed alpha
Helix 9
AA9
A
150 160Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
202 211Right-handed alpha
Helix 12
AB3
A
214 219Right-handed alpha
Helix 13
AB4
A
222 239Right-handed alpha
Helix 14
AB5
B
14 29Right-handed alpha
Helix 15
AB6
B
43 49Right-handed 310
Helix 16
AB7
B
57 64Right-handed alpha
Helix 17
AB8
B
67 71Right-handed 310
Helix 18
AB9
B
88 93Right-handed alpha
Helix 19
AC1
B
94 98Right-handed 310
Helix 20
AC2
B
103 116Right-handed alpha
Helix 21
AC3
B
130 140Right-handed alpha
Helix 22
AC4
B
150 157Right-handed alpha
Helix 23
AC5
B
177 191Right-handed alpha
Helix 24
AC6
B
202 208Right-handed alpha
Helix 25
AC7
B
214 219Right-handed alpha
Helix 26
AC8
B
222 239Right-handed alpha
Helix 27
AC9
C
42 52Right-handed alpha
Helix 28
AD1
C
52 60Right-handed alpha
Helix 29
AD2
D
44 52Right-handed alpha
Helix 30
AD3
D
52 61Right-handed alpha
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There are 4 sheets in PDB entry 6YAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
33 37parallel
Strand 4
A
120 125parallel
Strand 5
A
3 8parallel
Strand 6
A
142 147parallel
Strand 7
A
167 170parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
D
29 30anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
79 82anti-parallel
Strand 3
B
33 37parallel
Strand 4
B
120 125parallel
Strand 5
B
3 8parallel
Strand 6
B
142 148parallel
Strand 7
B
167 173parallel
Strand 8
B
194 200parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
C
29 30anti-parallel
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