Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YBA entry

There are 26 chains in PDB entry 6YBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6GLY 921
B
 PRO 4GLY 921
C
 ALA 2GLY 921
D
 MET 6GLY 921
E
 ALA 2GLY 921
F
 MET 6GLY 921
G
 MET 6GLY 921
H
 MET 1GLY 921
I
 MET 6GLY 921
J
 ALA 2GLY 921
K
 PRO 4GLY 921
L
 ALA 2GLY 921
M
 GLU 35PHE 508
N
 GLN 12LEU 309
O
 SER 2ASP 233
P
 SER 2ASP 233
Q
 VAL 10GLY 59
R
 VAL 10GLY 59
S
 VAL 10GLY 59
T
 VAL 10GLY 59
U
 ASN 5GLY 33
V
 ASN 5GLY 33
W
 ALA 18GLY 23
Y
 ASN 5GLY 33
u
 ASN 5GLY 33
w
 GLY 12GLY 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are230 helices in PDB entry 6YBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
19 24Right-handed alpha
Helix 3
AA3
A
25 35Right-handed alpha
Helix 4
AA4
A
307 310Right-handed 310
Helix 5
AA5
A
341 347Right-handed alpha
Helix 6
AA6
A
437 450Right-handed alpha
Helix 7
AA7
A
473 480Right-handed alpha
Helix 8
AA8
A
499 503Right-handed 310
Helix 9
AA9
A
516 524Right-handed alpha
Helix 10
AB1
A
539 543Right-handed 310
Helix 11
AB2
A
561 565Right-handed alpha
Helix 12
AB3
A
596 607Right-handed alpha
Helix 13
AB4
A
678 683Right-handed alpha
Helix 14
AB5
A
699 701Right-handed 310
Helix 15
AB6
A
735 740Right-handed alpha
Helix 16
AB7
A
742 748Right-handed alpha
Helix 17
AB8
A
824 828Right-handed 310
Helix 18
AB9
A
859 864Right-handed alpha
Helix 19
AC1
B
8 13Right-handed alpha
Helix 20
AC2
B
25 33Right-handed alpha
Helix 21
AC3
B
306 310Right-handed 310
Helix 22
AC4
B
341 346Right-handed alpha
Helix 23
AC5
B
349 354Right-handed alpha
Helix 24
AC6
B
436 448Right-handed alpha
Helix 25
AC7
B
473 480Right-handed alpha
Helix 26
AC8
B
516 524Right-handed alpha
Helix 27
AC9
B
539 544Right-handed alpha
Helix 28
AD1
B
599 603Right-handed 310
Helix 29
AD2
B
699 701Right-handed 310
Helix 30
AD3
B
735 748Right-handed alpha
Helix 31
AD4
B
791 795Right-handed 310
Helix 32
AD5
B
861 866Right-handed 310
Helix 33
AD6
C
8 13Right-handed alpha
Helix 34
AD7
C
25 35Right-handed alpha
Helix 35
AD8
C
41 45Right-handed 310
Helix 36
AD9
C
287 292Right-handed 310
Helix 37
AE1
C
307 310Right-handed 310
Helix 38
AE2
C
341 354Right-handed alpha
Helix 39
AE3
C
371 376Right-handed alpha
Helix 40
AE4
C
440 449Right-handed alpha
Helix 41
AE5
C
473 480Right-handed alpha
Helix 42
AE6
C
483 487Right-handed 310
Helix 43
AE7
C
501 505Right-handed 310
Helix 44
AE8
C
600 608Right-handed alpha
Helix 45
AE9
C
659 661Right-handed 310
Helix 46
AF1
C
735 748Right-handed alpha
Helix 47
AF2
C
791 795Right-handed 310
Helix 48
AF3
D
8 13Right-handed alpha
Helix 49
AF4
D
19 24Right-handed alpha
Helix 50
AF5
D
27 35Right-handed alpha
Helix 51
AF6
D
307 310Right-handed 310
Helix 52
AF7
D
342 347Right-handed alpha
Helix 53
AF8
D
437 450Right-handed alpha
Helix 54
AF9
D
451 454Right-handed 310
Helix 55
AG1
D
473 480Right-handed alpha
Helix 56
AG2
D
499 503Right-handed 310
Helix 57
AG3
D
515 522Right-handed alpha
Helix 58
AG4
D
561 565Right-handed alpha
Helix 59
AG5
D
598 607Right-handed alpha
Helix 60
AG6
D
678 682Right-handed 310
Helix 61
AG7
D
728 732Right-handed 310
Helix 62
AG8
D
735 748Right-handed alpha
Helix 63
AG9
D
767 769Right-handed 310
Helix 64
AH1
D
798 802Right-handed 310
Helix 65
AH2
E
6 12Right-handed alpha
Helix 66
AH3
E
25 35Right-handed alpha
Helix 67
AH4
E
288 292Right-handed 310
Helix 68
AH5
E
307 310Right-handed 310
Helix 69
AH6
E
436 448Right-handed alpha
Helix 70
AH7
E
473 478Right-handed alpha
Helix 71
AH8
E
603 608Right-handed alpha
Helix 72
AH9
E
678 683Right-handed alpha
Helix 73
AI1
E
687 689Right-handed 310
Helix 74
AI2
E
735 740Right-handed alpha
Helix 75
AI3
E
742 748Right-handed alpha
Helix 76
AI4
E
767 769Right-handed 310
Helix 77
AI5
E
860 863Right-handed 310
Helix 78
AI6
E
864 869Right-handed alpha
Helix 79
AI7
F
7 14Right-handed alpha
Helix 80
AI8
F
27 35Right-handed alpha
Helix 81
AI9
F
307 310Right-handed 310
Helix 82
AJ1
F
438 441Right-handed 310
Helix 83
AJ2
F
442 448Right-handed alpha
Helix 84
AJ3
F
473 480Right-handed alpha
Helix 85
AJ4
F
484 487Right-handed 310
Helix 86
AJ5
F
513 520Right-handed alpha
Helix 87
AJ6
F
539 543Right-handed 310
Helix 88
AJ7
F
561 565Right-handed alpha
Helix 89
AJ8
F
596 605Right-handed alpha
Helix 90
AJ9
F
606 608Right-handed 310
Helix 91
AK1
F
678 683Right-handed alpha
Helix 92
AK2
F
697 701Right-handed 310
Helix 93
AK3
F
736 746Right-handed alpha
Helix 94
AK4
F
766 770Right-handed alpha
Helix 95
AK5
F
791 795Right-handed 310
Helix 96
AK6
G
7 14Right-handed alpha
Helix 97
AK7
G
25 33Right-handed alpha
Helix 98
AK8
G
288 293Right-handed 310
Helix 99
AK9
G
306 310Right-handed 310
Helix 100
AL1
G
342 346Right-handed 310
Helix 101
AL2
G
436 450Right-handed alpha
Helix 102
AL3
G
473 480Right-handed alpha
Helix 103
AL4
G
513 521Right-handed alpha
Helix 104
AL5
G
596 606Right-handed alpha
Helix 105
AL6
G
697 701Right-handed 310
Helix 106
AL7
G
735 746Right-handed alpha
Helix 107
AL8
G
767 769Right-handed 310
Helix 108
AL9
G
791 795Right-handed 310
Helix 109
AM1
G
864 868Right-handed 310
Helix 110
AM2
H
6 14Right-handed alpha
Helix 111
AM3
H
19 24Right-handed alpha
Helix 112
AM4
H
25 35Right-handed alpha
Helix 113
AM5
H
97 99Right-handed 310
Helix 114
AM6
H
307 310Right-handed 310
Helix 115
AM7
H
348 353Right-handed alpha
Helix 116
AM8
H
436 448Right-handed alpha
Helix 117
AM9
H
450 454Right-handed 310
Helix 118
AN1
H
473 480Right-handed alpha
Helix 119
AN2
H
499 504Right-handed alpha
Helix 120
AN3
H
515 520Right-handed alpha
Helix 121
AN4
H
539 543Right-handed 310
Helix 122
AN5
H
599 606Right-handed alpha
Helix 123
AN6
H
659 661Right-handed 310
Helix 124
AN7
H
678 683Right-handed alpha
Helix 125
AN8
H
699 701Right-handed 310
Helix 126
AN9
H
736 748Right-handed alpha
Helix 127
AO1
H
849 853Right-handed 310
Helix 128
AO2
I
27 35Right-handed alpha
Helix 129
AO3
I
306 310Right-handed 310
Helix 130
AO4
I
348 352Right-handed 310
Helix 131
AO5
I
442 448Right-handed alpha
Helix 132
AO6
I
473 480Right-handed alpha
Helix 133
AO7
I
539 543Right-handed 310
Helix 134
AO8
I
573 578Right-handed alpha
Helix 135
AO9
I
596 607Right-handed alpha
Helix 136
AP1
I
659 661Right-handed 310
Helix 137
AP2
I
678 683Right-handed alpha
Helix 138
AP3
I
686 689Right-handed 310
Helix 139
AP4
I
735 740Right-handed alpha
Helix 140
AP5
I
742 748Right-handed alpha
Helix 141
AP6
I
767 771Right-handed 310
Helix 142
AP7
J
7 12Right-handed alpha
Helix 143
AP8
J
19 24Right-handed alpha
Helix 144
AP9
J
25 33Right-handed alpha
Helix 145
AQ1
J
288 292Right-handed 310
Helix 146
AQ2
J
306 310Right-handed 310
Helix 147
AQ3
J
341 347Right-handed alpha
Helix 148
AQ4
J
348 354Right-handed alpha
Helix 149
AQ5
J
436 450Right-handed alpha
Helix 150
AQ6
J
473 480Right-handed alpha
Helix 151
AQ7
J
499 504Right-handed alpha
Helix 152
AQ8
J
516 522Right-handed alpha
Helix 153
AQ9
J
539 543Right-handed 310
Helix 154
AR1
J
561 566Right-handed alpha
Helix 155
AR2
J
573 578Right-handed alpha
Helix 156
AR3
J
597 605Right-handed alpha
Helix 157
AR4
J
686 689Right-handed 310
Helix 158
AR5
J
735 748Right-handed alpha
Helix 159
AR6
K
25 35Right-handed alpha
Helix 160
AR7
K
307 310Right-handed 310
Helix 161
AR8
K
342 348Right-handed alpha
Helix 162
AR9
K
349 354Right-handed alpha
Helix 163
AS1
K
371 376Right-handed alpha
Helix 164
AS2
K
436 449Right-handed alpha
Helix 165
AS3
K
473 480Right-handed alpha
Helix 166
AS4
K
499 504Right-handed 310
Helix 167
AS5
K
513 520Right-handed alpha
Helix 168
AS6
K
539 543Right-handed 310
Helix 169
AS7
K
561 565Right-handed alpha
Helix 170
AS8
K
596 605Right-handed alpha
Helix 171
AS9
K
657 661Right-handed 310
Helix 172
AT1
K
678 683Right-handed alpha
Helix 173
AT2
K
699 701Right-handed 310
Helix 174
AT3
K
736 740Right-handed alpha
Helix 175
AT4
K
742 748Right-handed alpha
Helix 176
AT5
K
791 795Right-handed 310
Helix 177
AT6
L
6 12Right-handed alpha
Helix 178
AT7
L
25 35Right-handed alpha
Helix 179
AT8
L
307 310Right-handed 310
Helix 180
AT9
L
349 354Right-handed alpha
Helix 181
AU1
L
440 448Right-handed alpha
Helix 182
AU2
L
450 454Right-handed 310
Helix 183
AU3
L
473 478Right-handed alpha
Helix 184
AU4
L
499 503Right-handed 310
Helix 185
AU5
L
515 520Right-handed alpha
Helix 186
AU6
L
561 565Right-handed alpha
Helix 187
AU7
L
599 604Right-handed alpha
Helix 188
AU8
L
659 661Right-handed 310
Helix 189
AU9
L
678 683Right-handed alpha
Helix 190
AV1
L
728 732Right-handed 310
Helix 191
AV2
L
735 740Right-handed alpha
Helix 192
AV3
L
743 748Right-handed alpha
Helix 193
AV4
L
863 868Right-handed alpha
Helix 194
AV5
M
71 76Right-handed 310
Helix 195
AV6
M
172 180Right-handed alpha
Helix 196
AV7
M
181 183Right-handed 310
Helix 197
AV8
M
192 196Right-handed 310
Helix 198
AV9
M
198 202Right-handed 310
Helix 199
AW1
M
251 256Right-handed alpha
Helix 200
AW2
M
284 289Right-handed alpha
Helix 201
AW3
M
343 348Right-handed alpha
Helix 202
AW4
M
355 359Right-handed 310
Helix 203
AW5
M
393 397Right-handed 310
Helix 204
AW6
M
416 427Right-handed alpha
Helix 205
AW7
N
16 24Right-handed alpha
Helix 206
AW8
N
34 43Right-handed alpha
Helix 207
AW9
N
58 70Right-handed alpha
Helix 208
AX1
N
76 81Right-handed alpha
Helix 209
AX2
N
81 91Right-handed alpha
Helix 210
AX3
N
95 97Right-handed 310
Helix 211
AX4
N
98 113Right-handed alpha
Helix 212
AX5
N
115 126Right-handed alpha
Helix 213
AX6
N
133 139Right-handed alpha
Helix 214
AX7
N
165 178Right-handed alpha
Helix 215
AX8
N
209 217Right-handed alpha
Helix 216
AX9
N
239 247Right-handed alpha
Helix 217
AY1
N
265 287Right-handed alpha
Helix 218
AY2
N
289 294Right-handed alpha
Helix 219
AY3
N
297 300Right-handed 310
Helix 220
AY4
N
301 309Right-handed alpha
Helix 221
AY5
O
33 36Right-handed 310
Helix 222
AY6
O
37 59Right-handed alpha
Helix 223
AY7
O
98 105Right-handed alpha
Helix 224
AY8
O
190 197Right-handed alpha
Helix 225
AY9
O
215 219Right-handed 310
Helix 226
AZ1
P
32 36Right-handed 310
Helix 227
AZ2
P
37 59Right-handed alpha
Helix 228
AZ3
P
98 105Right-handed alpha
Helix 229
AZ4
P
190 197Right-handed alpha
Helix 230
AZ5
P
215 219Right-handed 310
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