Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YBB entry

There are 6 chains in PDB entry 6YBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 244
B
 ALA 2THR 244
C
 SER 40GLN 61
D
 LEU 9ALA 59
E
 PRO 221LEU 515
F
 PRO 221ASP 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6YBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
43 49Right-handed 310
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
88 94Right-handed alpha
Helix 6
AA6
A
94 100Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
130 140Right-handed alpha
Helix 9
AA9
A
150 160Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
202 211Right-handed alpha
Helix 12
AB3
A
214 219Right-handed alpha
Helix 13
AB4
A
222 239Right-handed alpha
Helix 14
AB5
B
14 29Right-handed alpha
Helix 15
AB6
B
44 49Right-handed 310
Helix 16
AB7
B
57 64Right-handed alpha
Helix 17
AB8
B
67 71Right-handed 310
Helix 18
AB9
B
88 94Right-handed alpha
Helix 19
AC1
B
95 102Right-handed 310
Helix 20
AC2
B
103 116Right-handed alpha
Helix 21
AC3
B
130 139Right-handed alpha
Helix 22
AC4
B
150 160Right-handed alpha
Helix 23
AC5
B
177 191Right-handed alpha
Helix 24
AC6
B
202 212Right-handed alpha
Helix 25
AC7
B
214 219Right-handed alpha
Helix 26
AC8
B
222 239Right-handed alpha
Helix 27
AC9
C
41 52Right-handed alpha
Helix 28
AD1
C
52 60Right-handed alpha
Helix 29
AD2
D
42 52Right-handed alpha
Helix 30
AD3
D
52 58Right-handed alpha
Helix 31
AD4
E
222 226Right-handed 310
Helix 32
AD5
E
233 236Right-handed 310
Helix 33
AD6
E
250 259Right-handed alpha
Helix 34
AD7
E
272 274Right-handed 310
Helix 35
AD8
E
275 291Right-handed alpha
Helix 36
AD9
E
306 317Right-handed alpha
Helix 37
AE1
E
327 338Right-handed alpha
Helix 38
AE2
E
350 357Right-handed alpha
Helix 39
AE3
E
368 381Right-handed alpha
Helix 40
AE4
E
403 411Right-handed alpha
Helix 41
AE5
E
438 447Right-handed alpha
Helix 42
AE6
E
450 454Right-handed alpha
Helix 43
AE7
E
463 475Right-handed alpha
Helix 44
AE8
E
476 477Right-handed 310
Helix 45
AE9
E
478 482Right-handed 310
Helix 46
AF1
F
233 236Right-handed 310
Helix 47
AF2
F
250 259Right-handed alpha
Helix 48
AF3
F
272 274Right-handed 310
Helix 49
AF4
F
275 291Right-handed alpha
Helix 50
AF5
F
306 317Right-handed alpha
Helix 51
AF6
F
327 338Right-handed alpha
Helix 52
AF7
F
351 356Right-handed alpha
Helix 53
AF8
F
368 382Right-handed alpha
Helix 54
AF9
F
403 409Right-handed alpha
Helix 55
AG1
F
435 437Right-handed 310
Helix 56
AG2
F
438 447Right-handed alpha
Helix 57
AG3
F
450 454Right-handed alpha
Helix 58
AG4
F
463 475Right-handed alpha
Helix 59
AG5
F
478 482Right-handed 310
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There are 7 sheets in PDB entry 6YBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
142 148parallel
Strand 3
A
3 8parallel
Strand 4
A
120 125parallel
Strand 5
A
33 37parallel
Strand 6
A
79 82parallel
Strand 7
A
72 76anti-parallel
Strand 8
E
510 512anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
167 173parallel
Strand 3
B
142 148parallel
Strand 4
B
3 8parallel
Strand 5
B
120 125parallel
Strand 6
B
33 37parallel
Strand 7
B
79 82parallel
Strand 8
B
72 76anti-parallel
Strand 9
F
510 512anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
26 30anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
245 248first strand
Strand 2
E
228 231parallel
Strand 3
E
265 270parallel
Strand 4
E
295 300parallel
Strand 5
E
320 322parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 366first strand
Strand 2
E
418 422parallel
Strand 3
E
427 432anti-parallel
Strand 4
E
391 398anti-parallel
Strand 5
E
455 461anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
245 248first strand
Strand 2
F
228 231parallel
Strand 3
F
265 270parallel
Strand 4
F
295 300parallel
Strand 5
F
320 322parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
365 366first strand
Strand 2
F
419 423parallel
Strand 3
F
426 432anti-parallel
Strand 4
F
391 398anti-parallel
Strand 5
F
455 461anti-parallel
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