Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YBH entry

There are 6 chains in PDB entry 6YBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12ALA 228
B
 MET 12PHE 226
C
 MET 12ALA 228
D
 MET 12SER 230
E
 MET 12ARG 220
F
 MET 12ALA 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6YBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 39Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
72 94Right-handed alpha
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
113 121Right-handed alpha
Helix 8
AA8
A
125 143Right-handed alpha
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
171 175Right-handed 310
Helix 11
AB2
A
176 192Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
B
32 39Right-handed alpha
Helix 14
AB5
B
40 44Right-handed 310
Helix 15
AB6
B
53 58Right-handed alpha
Helix 16
AB7
B
64 72Right-handed alpha
Helix 17
AB8
B
72 94Right-handed alpha
Helix 18
AB9
B
106 113Right-handed alpha
Helix 19
AC1
B
113 121Right-handed alpha
Helix 20
AC2
B
125 143Right-handed alpha
Helix 21
AC3
B
156 167Right-handed alpha
Helix 22
AC4
B
169 173Right-handed 310
Helix 23
AC5
B
176 192Right-handed alpha
Helix 24
AC6
C
32 39Right-handed alpha
Helix 25
AC7
C
40 44Right-handed 310
Helix 26
AC8
C
53 58Right-handed alpha
Helix 27
AC9
C
64 72Right-handed alpha
Helix 28
AD1
C
72 94Right-handed alpha
Helix 29
AD2
C
106 113Right-handed alpha
Helix 30
AD3
C
113 121Right-handed alpha
Helix 31
AD4
C
125 143Right-handed alpha
Helix 32
AD5
C
156 166Right-handed alpha
Helix 33
AD6
C
176 192Right-handed alpha
Helix 34
AD7
C
223 227Right-handed 310
Helix 35
AD8
D
32 39Right-handed alpha
Helix 36
AD9
D
40 44Right-handed 310
Helix 37
AE1
D
53 58Right-handed alpha
Helix 38
AE2
D
64 72Right-handed alpha
Helix 39
AE3
D
72 94Right-handed alpha
Helix 40
AE4
D
106 113Right-handed alpha
Helix 41
AE5
D
113 121Right-handed alpha
Helix 42
AE6
D
125 143Right-handed alpha
Helix 43
AE7
D
156 168Right-handed alpha
Helix 44
AE8
D
169 173Right-handed 310
Helix 45
AE9
D
176 192Right-handed alpha
Helix 46
AF1
D
223 227Right-handed 310
Helix 47
AF2
E
32 39Right-handed alpha
Helix 48
AF3
E
40 44Right-handed 310
Helix 49
AF4
E
53 59Right-handed alpha
Helix 50
AF5
E
64 72Right-handed alpha
Helix 51
AF6
E
72 94Right-handed alpha
Helix 52
AF7
E
106 113Right-handed alpha
Helix 53
AF8
E
113 121Right-handed alpha
Helix 54
AF9
E
125 143Right-handed alpha
Helix 55
AG1
E
156 168Right-handed alpha
Helix 56
AG2
E
171 175Right-handed 310
Helix 57
AG3
E
176 192Right-handed alpha
Helix 58
AG4
F
32 39Right-handed alpha
Helix 59
AG5
F
40 44Right-handed 310
Helix 60
AG6
F
53 58Right-handed alpha
Helix 61
AG7
F
64 71Right-handed alpha
Helix 62
AG8
F
72 94Right-handed alpha
Helix 63
AG9
F
106 113Right-handed alpha
Helix 64
AH1
F
113 121Right-handed alpha
Helix 65
AH2
F
125 143Right-handed alpha
Helix 66
AH3
F
156 167Right-handed alpha
Helix 67
AH4
F
169 173Right-handed 310
Helix 68
AH5
F
176 192Right-handed alpha
Helix 69
AH6
F
223 227Right-handed 310
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There are 6 sheets in PDB entry 6YBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
100 104parallel
Strand 3
A
21 27parallel
Strand 4
A
149 154parallel
Strand 5
A
201 206parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
100 104parallel
Strand 3
B
21 27parallel
Strand 4
B
149 154parallel
Strand 5
B
201 206parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
100 104parallel
Strand 3
C
21 27parallel
Strand 4
C
149 154parallel
Strand 5
C
201 206parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
100 104parallel
Strand 3
D
21 27parallel
Strand 4
D
149 154parallel
Strand 5
D
201 206parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 50first strand
Strand 2
E
100 104parallel
Strand 3
E
21 27parallel
Strand 4
E
149 154parallel
Strand 5
E
202 206parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
47 50first strand
Strand 2
F
100 104parallel
Strand 3
F
21 26parallel
Strand 4
F
149 154parallel
Strand 5
F
202 206parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il