Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YBW entry

There are 48 chains in PDB entry 6YBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 2	ALA 257
B	ASP 3	LYS 152
E	GLY 2	PRO 141
D	PRO 2	ALA 178
G	ILE 8	GLN 193
F	LEU 6	SER 59
H	PRO 2	LYS 82
K	MET 1	LYS 81
J	VAL 2	PHE 130
M	GLU 79	ARG 132
L	ASP 57	THR 276
O	ASP 23	GLY 233
N	SER 2	GLU 208
Q	THR 2	ARG 100
P	VAL 21	LEU 151
S	MET 1	LYS 230
R	GLY 2	GLY 207
T	THR 4	GLY 128
q	GLU 22	LEU 109
p	ASP 29	PHE 113
I	GLY 2	ALA 151
z	ASP 43	THR 235
y	VAL 48	LYS 312
9	MET 1	SER 24
A	U 1	U 26
A	U 28	U 115
A	C 117	C 118
A	U 120	U 120
A	G 122	A 158
A	U 160	G 165
A	G 167	A 173
A	A 175	C 483
A	A 485	A 508
A	G 510	A 516
A	G 518	G 611
A	G 613	A 643
A	C 645	U 667
A	A 669	U 682
A	G 684	A 813
A	U 815	G 821
A	C 824	A 1030
A	C 1032	A 1080
A	A 1082	G 1702
A	C 1704	G 1829
A	A 1831	A 1831
A	C 1833	G 1849
A	C 1852	A 1869
7	A 1	A 28

There are109 helices in PDB entry 6YBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	10	14	Right-handed 310
Helix 2	AA2	C	15	19	Right-handed 310
Helix 3	AA3	C	44	51	Right-handed alpha
Helix 4	AA4	C	59	66	Right-handed alpha
Helix 5	AA5	C	117	119	Right-handed 310
Helix 6	AA6	C	247	256	Right-handed alpha
Helix 7	AA7	E	9	21	Right-handed alpha
Helix 8	AA8	E	24	32	Right-handed alpha
Helix 9	AA9	E	89	94	Right-handed 310
Helix 10	AB1	E	130	135	Right-handed alpha
Helix 11	AB2	D	21	36	Right-handed alpha
Helix 12	AB3	D	40	63	Right-handed alpha
Helix 13	AB4	D	67	84	Right-handed alpha
Helix 14	AB5	D	93	98	Right-handed alpha
Helix 15	AB6	D	109	116	Right-handed alpha
Helix 16	AB7	D	122	132	Right-handed alpha
Helix 17	AB8	D	153	155	Right-handed 310
Helix 18	AB9	D	171	176	Right-handed alpha
Helix 19	AC1	G	17	33	Right-handed alpha
Helix 20	AC2	G	65	67	Right-handed 310
Helix 21	AC3	G	68	73	Right-handed alpha
Helix 22	AC4	G	75	87	Right-handed alpha
Helix 23	AC5	G	117	120	Right-handed 310
Helix 24	AC6	G	121	134	Right-handed alpha
Helix 25	AC7	G	162	167	Right-handed alpha
Helix 26	AC8	G	169	182	Right-handed alpha
Helix 27	AC9	F	10	16	Right-handed alpha
Helix 28	AD1	F	30	43	Right-handed alpha
Helix 29	AD2	H	11	18	Right-handed alpha
Helix 30	AD3	K	56	63	Right-handed alpha
Helix 31	AD4	K	65	76	Right-handed alpha
Helix 32	AD5	J	5	20	Right-handed alpha
Helix 33	AD6	J	31	45	Right-handed alpha
Helix 34	AD7	J	85	94	Right-handed alpha
Helix 35	AD8	J	114	119	Right-handed alpha
Helix 36	AD9	M	99	109	Right-handed alpha
Helix 37	AE1	L	64	72	Right-handed alpha
Helix 38	AE2	L	78	84	Right-handed alpha
Helix 39	AE3	L	91	98	Right-handed alpha
Helix 40	AE4	L	146	160	Right-handed alpha
Helix 41	AE5	L	207	218	Right-handed alpha
Helix 42	AE6	L	232	246	Right-handed alpha
Helix 43	AE7	L	247	249	Right-handed 310
Helix 44	AE8	L	264	269	Right-handed alpha
Helix 45	AE9	L	269	274	Right-handed alpha
Helix 46	AF1	O	23	27	Right-handed 310
Helix 47	AF2	O	58	63	Right-handed alpha
Helix 48	AF3	O	71	76	Right-handed alpha
Helix 49	AF4	O	106	113	Right-handed alpha
Helix 50	AF5	O	157	178	Right-handed alpha
Helix 51	AF6	O	180	189	Right-handed alpha
Helix 52	AF7	O	191	201	Right-handed alpha
Helix 53	AF8	O	225	232	Right-handed alpha
Helix 54	AF9	N	11	22	Right-handed alpha
Helix 55	AG1	N	33	36	Right-handed 310
Helix 56	AG2	N	50	68	Right-handed alpha
Helix 57	AG3	N	70	72	Right-handed 310
Helix 58	AG4	N	83	94	Right-handed alpha
Helix 59	AG5	N	130	138	Right-handed alpha
Helix 60	AG6	N	167	186	Right-handed alpha
Helix 61	AG7	N	198	203	Right-handed 310
Helix 62	AG8	Q	46	48	Right-handed 310
Helix 63	AG9	Q	49	57	Right-handed alpha
Helix 64	AH1	Q	74	81	Right-handed alpha
Helix 65	AH2	Q	90	94	Right-handed 310
Helix 66	AH3	P	65	69	Right-handed 310
Helix 67	AH4	P	70	89	Right-handed alpha
Helix 68	AH5	P	111	122	Right-handed alpha
Helix 69	AH6	S	121	126	Right-handed alpha
Helix 70	AH7	S	137	145	Right-handed alpha
Helix 71	AH8	S	153	157	Right-handed 310
Helix 72	AH9	S	181	229	Right-handed alpha
Helix 73	AI1	R	88	94	Right-handed alpha
Helix 74	AI2	R	106	117	Right-handed alpha
Helix 75	AI3	R	142	155	Right-handed alpha
Helix 76	AI4	R	159	169	Right-handed alpha
Helix 77	AI5	R	192	206	Right-handed alpha
Helix 78	AI6	T	36	48	Right-handed alpha
Helix 79	AI7	T	51	53	Right-handed 310
Helix 80	AI8	T	78	86	Right-handed alpha
Helix 81	AI9	T	87	94	Right-handed alpha
Helix 82	AJ1	T	103	115	Right-handed alpha
Helix 83	AJ2	T	120	127	Right-handed alpha
Helix 84	AJ3	q	96	102	Right-handed alpha
Helix 85	AJ4	p	55	68	Right-handed alpha
Helix 86	AJ5	p	89	98	Right-handed alpha
Helix 87	AJ6	I	29	43	Right-handed alpha
Helix 88	AJ7	I	46	58	Right-handed alpha
Helix 89	AJ8	I	62	68	Right-handed alpha
Helix 90	AJ9	I	70	79	Right-handed alpha
Helix 91	AK1	I	85	105	Right-handed alpha
Helix 92	AK2	I	108	132	Right-handed alpha
Helix 93	AK3	I	142	146	Right-handed 310
Helix 94	AK4	z	54	65	Right-handed alpha
Helix 95	AK5	z	75	96	Right-handed alpha
Helix 96	AK6	z	114	135	Right-handed alpha
Helix 97	AK7	z	154	170	Right-handed alpha
Helix 98	AK8	z	174	191	Right-handed alpha
Helix 99	AK9	z	194	214	Right-handed alpha
Helix 100	AL1	y	51	74	Right-handed alpha
Helix 101	AL2	y	75	94	Right-handed alpha
Helix 102	AL3	y	96	101	Right-handed alpha
Helix 103	AL4	y	103	121	Right-handed alpha
Helix 104	AL5	y	123	128	Right-handed alpha
Helix 105	AL6	y	133	150	Right-handed alpha
Helix 106	AL7	y	152	160	Right-handed alpha
Helix 107	AL8	y	265	278	Right-handed alpha
Helix 108	AL9	y	287	296	Right-handed alpha
Helix 109	AM1	9	2	23	Right-handed alpha

There are 32 sheets in PDB entry 6YBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	83	84	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	70	72	anti-parallel
Strand 3	C	89	92	anti-parallel
Strand 4	C	97	100	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	136	141	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	159	163	anti-parallel
Strand 5	C	169	173	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	207	211	anti-parallel
Strand 3	C	192	199	anti-parallel
Strand 4	C	180	183	anti-parallel
Strand 5	C	225	230	anti-parallel
Strand 6	C	233	234	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	79	first strand
Strand 2	B	85	96	anti-parallel
Strand 3	B	101	112	anti-parallel
Strand 4	B	140	146	parallel
Strand 5	B	125	130	anti-parallel
Strand 6	B	72	79	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	120	125	anti-parallel
Strand 3	E	99	104	anti-parallel
Strand 4	E	46	58	anti-parallel
Strand 5	E	66	74	anti-parallel
Strand 6	E	80	84	anti-parallel
Strand 7	E	120	125	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	135	137	anti-parallel
Strand 3	D	157	159	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	53	first strand
Strand 2	G	57	64	anti-parallel
Strand 3	G	90	96	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	188	first strand
Strand 2	G	152	158	parallel
Strand 3	G	139	146	anti-parallel
Strand 4	J	47	53	anti-parallel
Strand 5	J	60	65	anti-parallel
Strand 6	J	24	27	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	32	36	anti-parallel
Strand 3	H	78	81	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	62	65	anti-parallel
Strand 3	H	72	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	39	first strand
Strand 2	K	46	55	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	74	first strand
Strand 2	J	123	130	anti-parallel
Strand 3	J	80	81	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	74	first strand
Strand 2	J	123	130	anti-parallel
Strand 3	J	101	105	anti-parallel
Strand 4	J	110	112	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	96	98	first strand
Strand 2	M	117	119	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	103	113	first strand
Strand 2	L	122	131	anti-parallel
Strand 3	L	136	144	anti-parallel
Strand 4	L	163	164	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	184	188	first strand
Strand 2	L	191	196	anti-parallel
Strand 3	L	222	227	anti-parallel
Strand 4	L	204	205	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	43	49	first strand
Strand 2	O	29	34	anti-parallel
Strand 3	O	95	105	parallel
Strand 4	O	82	91	anti-parallel
Strand 5	O	66	70	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	43	49	first strand
Strand 2	O	29	34	anti-parallel
Strand 3	O	95	105	parallel
Strand 4	O	207	219	anti-parallel
Strand 5	O	134	143	anti-parallel
Strand 6	O	120	128	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	41	first strand
Strand 2	N	47	49	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	97	100	first strand
Strand 2	N	74	78	parallel
Strand 3	N	121	124	parallel
Strand 4	N	144	148	parallel
Strand 5	N	159	162	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	20	21	first strand
Strand 2	Q	30	31	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	36	43	first strand
Strand 2	Q	66	73	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	52	57	first strand
Strand 2	P	40	45	anti-parallel
Strand 3	P	30	35	anti-parallel
Strand 4	P	92	98	parallel
Strand 5	P	125	131	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	17	first strand
Strand 2	S	2	7	anti-parallel
Strand 3	S	108	115	parallel
Strand 4	S	49	56	anti-parallel
Strand 5	S	35	37	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	73	77	first strand
Strand 2	S	93	97	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	4	first strand
Strand 2	R	29	30	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	42	45	first strand
Strand 2	R	55	59	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	62	67	first strand
Strand 2	R	72	84	anti-parallel
Strand 3	R	100	105	anti-parallel
Strand 4	R	170	175	anti-parallel
Strand 5	R	186	189	anti-parallel
Strand 6	R	62	67	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	6	15	first strand
Strand 2	T	20	28	anti-parallel
Strand 3	T	68	76	anti-parallel
Strand 4	T	55	58	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	47	50	first strand
Strand 2	q	56	60	anti-parallel
Strand 3	q	89	94	parallel
Strand 4	q	77	80	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	71	76	first strand
Strand 2	p	80	86	anti-parallel
Strand 3	p	43	47	anti-parallel
Strand 4	p	33	37	anti-parallel
Strand 5	p	110	112	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBW