Analysis of interatomic Contacts of Structural Units in PDB entry:
6YCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YCE entry

There are 4 chains in PDB entry 6YCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ALA 25
A
 TRP 27GLU 216
B
 VAL 2ALA 25
B
 TRP 27GLU 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6YCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 12Right-handed 310
Helix 2
AA2
A
25 44Right-handed alpha
Helix 3
AA3
A
50 58Right-handed alpha
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
117 128Right-handed alpha
Helix 6
AA6
A
137 142Right-handed alpha
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
B
9 12Right-handed 310
Helix 9
AA9
B
25 44Right-handed alpha
Helix 10
AB1
B
50 58Right-handed alpha
Helix 11
AB2
B
61 65Right-handed 310
Helix 12
AB3
B
67 78Right-handed alpha
Helix 13
AB4
B
117 128Right-handed alpha
Helix 14
AB5
B
137 142Right-handed alpha
Helix 15
AB6
B
202 206Right-handed 310
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There are 5 sheets in PDB entry 6YCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
158 167anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
210 214anti-parallel
Strand 5
A
109 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
158 167anti-parallel
Strand 3
A
173 178anti-parallel
Strand 4
A
190 194anti-parallel
Strand 5
A
147 148parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
158 167anti-parallel
Strand 3
B
130 134anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
158 167anti-parallel
Strand 3
B
173 178anti-parallel
Strand 4
B
190 194anti-parallel
Strand 5
B
147 148parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il