Analysis of interatomic Contacts of Structural Units in PDB entry:
6YD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YD4 entry

There is 1 chain in PDB entry 6YD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 109ARG 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6YD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 121Right-handed 310
Helix 2
AA2
A
133 140Right-handed alpha
Helix 3
AA3
A
163 167Right-handed 310
Helix 4
AA4
A
168 172Right-handed 310
Helix 5
AA5
A
190 192Right-handed 310
Helix 6
AA6
A
193 204Right-handed alpha
Helix 7
AA7
A
232 241Right-handed alpha
Helix 8
AA8
A
267 281Right-handed alpha
Helix 9
AA9
A
282 285Right-handed 310
Helix 10
AB1
A
295 300Right-handed 310
Helix 11
AB2
A
302 306Right-handed 310
Helix 12
AB3
A
356 358Right-handed 310
Helix 13
AB4
A
366 385Right-handed alpha
Helix 14
AB5
A
389 401Right-handed alpha
Helix 15
AB6
A
430 439Right-handed alpha
Helix 16
AB7
A
497 499Right-handed 310
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There are 6 sheets in PDB entry 6YD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
220 225parallel
Strand 3
A
148 153parallel
Strand 4
A
249 252parallel
Strand 5
A
288 292parallel
Strand 6
A
314 320parallel
Strand 7
A
338 341parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
359 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
419 420anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 453first strand
Strand 2
A
561 573anti-parallel
Strand 3
A
459 460anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 453first strand
Strand 2
A
561 573anti-parallel
Strand 3
A
483 495anti-parallel
Strand 4
A
528 535anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 471first strand
Strand 2
A
545 553anti-parallel
Strand 3
A
501 506anti-parallel
Strand 4
A
512 516anti-parallel
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