Analysis of interatomic Contacts of Structural Units in PDB entry:
6YE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YE0 entry

There are 2 chains in PDB entry 6YE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 29GLY 369
A
 GLN 29SER 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6YE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
44 54Right-handed alpha
Helix 2
AA2
B
64 75Right-handed alpha
Helix 3
AA3
B
85 95Right-handed alpha
Helix 4
AA4
B
102 106Right-handed 310
Helix 5
AA5
B
108 112Right-handed 310
Helix 6
AA6
B
113 122Right-handed alpha
Helix 7
AA7
B
123 128Right-handed 310
Helix 8
AA8
B
144 152Right-handed alpha
Helix 9
AA9
B
160 165Right-handed alpha
Helix 10
AB1
B
165 173Right-handed alpha
Helix 11
AB2
B
182 194Right-handed alpha
Helix 12
AB3
B
202 208Right-handed alpha
Helix 13
AB4
B
208 218Right-handed alpha
Helix 14
AB5
B
219 221Right-handed 310
Helix 15
AB6
B
228 235Right-handed alpha
Helix 16
AB7
B
245 259Right-handed alpha
Helix 17
AB8
B
288 301Right-handed alpha
Helix 18
AB9
B
301 313Right-handed alpha
Helix 19
AC1
B
318 325Right-handed 310
Helix 20
AC2
B
326 331Right-handed alpha
Helix 21
AC3
B
338 343Right-handed alpha
Helix 22
AC4
B
352 368Right-handed alpha
Helix 23
AC5
A
44 54Right-handed alpha
Helix 24
AC6
A
64 75Right-handed alpha
Helix 25
AC7
A
85 95Right-handed alpha
Helix 26
AC8
A
102 112Right-handed 310
Helix 27
AC9
A
113 121Right-handed alpha
Helix 28
AD1
A
122 123Right-handed 310
Helix 29
AD2
A
124 128Right-handed 310
Helix 30
AD3
A
144 152Right-handed alpha
Helix 31
AD4
A
160 165Right-handed alpha
Helix 32
AD5
A
165 173Right-handed alpha
Helix 33
AD6
A
182 194Right-handed alpha
Helix 34
AD7
A
202 208Right-handed alpha
Helix 35
AD8
A
208 218Right-handed alpha
Helix 36
AD9
A
219 221Right-handed 310
Helix 37
AE1
A
228 235Right-handed alpha
Helix 38
AE2
A
245 259Right-handed alpha
Helix 39
AE3
A
288 300Right-handed alpha
Helix 40
AE4
A
301 313Right-handed alpha
Helix 41
AE5
A
321 325Right-handed 310
Helix 42
AE6
A
326 331Right-handed alpha
Helix 43
AE7
A
338 343Right-handed alpha
Helix 44
AE8
A
352 368Right-handed alpha
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There are 6 sheets in PDB entry 6YE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
31 37parallel
Strand 3
B
81 82parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
177 179parallel
Strand 3
B
240 244parallel
Strand 4
B
131 143anti-parallel
Strand 5
B
315 316anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
131 143anti-parallel
Strand 3
B
273 280anti-parallel
Strand 4
B
345 346parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
31 37parallel
Strand 3
A
81 82parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
177 179parallel
Strand 3
A
240 244parallel
Strand 4
A
130 143anti-parallel
Strand 5
A
315 316anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
130 143anti-parallel
Strand 3
A
273 281anti-parallel
Strand 4
A
345 346parallel
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