Analysis of interatomic Contacts of Structural Units in PDB entry:
6YE3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YE3 entry

There are 7 chains in PDB entry 6YE3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ASP 223
B	ASP 1	ASN 219
C	THR -2	THR 128
D	GLU 1	GLY 225
E	ASP 1	ASN 219
F	SER -1	THR 128
G	GLU 1	THR 141

There are 42 helices in PDB entry 6YE3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	B	85	89	Right-handed 310
Helix 4	AA4	B	128	135	Right-handed alpha
Helix 5	AA5	B	190	194	Right-handed alpha
Helix 6	AA6	C	-1	24	Right-handed alpha
Helix 7	AA7	C	30	37	Right-handed alpha
Helix 8	AA8	C	47	50	Right-handed 310
Helix 9	AA9	C	51	56	Right-handed alpha
Helix 10	AB1	C	57	66	Right-handed alpha
Helix 11	AB2	C	67	69	Right-handed 310
Helix 12	AB3	C	76	93	Right-handed alpha
Helix 13	AB4	C	108	127	Right-handed alpha
Helix 14	AB5	D	28	32	Right-handed 310
Helix 15	AB6	D	87	91	Right-handed 310
Helix 16	AB7	D	165	167	Right-handed 310
Helix 17	AB8	E	85	89	Right-handed 310
Helix 18	AB9	E	128	135	Right-handed alpha
Helix 19	AC1	E	190	196	Right-handed alpha
Helix 20	AC2	F	0	24	Right-handed alpha
Helix 21	AC3	F	30	35	Right-handed alpha
Helix 22	AC4	F	48	50	Right-handed 310
Helix 23	AC5	F	51	57	Right-handed alpha
Helix 24	AC6	F	57	67	Right-handed alpha
Helix 25	AC7	F	76	93	Right-handed alpha
Helix 26	AC8	F	108	128	Right-handed alpha
Helix 27	AC9	G	28	32	Right-handed 310
Helix 28	AD1	G	87	91	Right-handed 310
Helix 29	AD2	G	103	107	Right-handed 310
Helix 30	AD3	G	165	167	Right-handed 310
Helix 31	AD4	G	195	197	Right-handed 310
Helix 32	AD5	H	85	89	Right-handed 310
Helix 33	AD6	H	128	135	Right-handed alpha
Helix 34	AD7	H	190	194	Right-handed alpha
Helix 35	AD8	I	-1	24	Right-handed alpha
Helix 36	AD9	I	30	35	Right-handed alpha
Helix 37	AE1	I	48	50	Right-handed 310
Helix 38	AE2	I	51	57	Right-handed alpha
Helix 39	AE3	I	57	66	Right-handed alpha
Helix 40	AE4	I	67	69	Right-handed 310
Helix 41	AE5	I	76	93	Right-handed alpha
Helix 42	AE6	I	108	127	Right-handed alpha

There are 34 sheets in PDB entry 6YE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	120	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	120	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	111	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	178	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	213	218	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	76	81	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	109	114	parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	59	60	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	36	37	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	166	170	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	198	205	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	69	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	111	112	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	144	154	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	172	174	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	144	154	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	178	179	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	203	208	anti-parallel
Strand 3	D	213	218	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	76	81	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	109	114	parallel
Strand 3	E	91	96	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	51	55	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	36	37	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	125	first strand
Strand 2	E	136	146	anti-parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	166	170	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	162	first strand
Strand 2	E	151	157	anti-parallel
Strand 3	E	198	205	anti-parallel
Strand 4	E	212	217	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	42	first strand
Strand 2	F	102	107	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	69	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	116	120	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	116	120	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	111	112	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	184	193	anti-parallel
Strand 4	G	172	179	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	163	first strand
Strand 2	G	203	208	anti-parallel
Strand 3	G	213	218	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	109	114	parallel
Strand 3	H	90	96	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	50	55	anti-parallel
Strand 6	H	59	60	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	36	37	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	136	146	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	166	170	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	162	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	198	205	anti-parallel
Strand 4	H	212	217	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	42	first strand
Strand 2	I	102	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YE3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YE3