Analysis of interatomic Contacts of Structural Units in PDB entry:
6YEH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YEH entry

There are 4 chains in PDB entry 6YEH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ALA 411
B	ALA 3	ALA 411
C	LEU 4	ALA 411
D	ASN 2	GLN 85

There are111 helices in PDB entry 6YEH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	18	Right-handed alpha
Helix 2	AA2	A	21	30	Right-handed alpha
Helix 3	AA3	A	76	95	Right-handed alpha
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	113	129	Right-handed alpha
Helix 6	AA6	A	130	132	Right-handed 310
Helix 7	AA7	A	146	162	Right-handed alpha
Helix 8	AA8	A	164	168	Right-handed 310
Helix 9	AA9	A	172	176	Right-handed 310
Helix 10	AB1	A	183	199	Right-handed alpha
Helix 11	AB2	A	215	228	Right-handed alpha
Helix 12	AB3	A	249	261	Right-handed alpha
Helix 13	AB4	A	273	277	Right-handed 310
Helix 14	AB5	A	316	325	Right-handed alpha
Helix 15	AB6	A	332	337	Right-handed alpha
Helix 16	AB7	A	338	353	Right-handed alpha
Helix 17	AB8	A	358	385	Right-handed alpha
Helix 18	AB9	A	387	408	Right-handed alpha
Helix 19	AC1	B	6	18	Right-handed alpha
Helix 20	AC2	B	21	30	Right-handed alpha
Helix 21	AC3	B	76	95	Right-handed alpha
Helix 22	AC4	B	108	112	Right-handed 310
Helix 23	AC5	B	113	129	Right-handed alpha
Helix 24	AC6	B	130	132	Right-handed 310
Helix 25	AC7	B	146	162	Right-handed alpha
Helix 26	AC8	B	164	168	Right-handed 310
Helix 27	AC9	B	172	176	Right-handed 310
Helix 28	AD1	B	183	200	Right-handed alpha
Helix 29	AD2	B	215	228	Right-handed alpha
Helix 30	AD3	B	249	261	Right-handed alpha
Helix 31	AD4	B	273	280	Right-handed 310
Helix 32	AD5	B	298	302	Right-handed 310
Helix 33	AD6	B	316	326	Right-handed alpha
Helix 34	AD7	B	332	337	Right-handed alpha
Helix 35	AD8	B	338	353	Right-handed alpha
Helix 36	AD9	B	358	385	Right-handed alpha
Helix 37	AE1	B	387	408	Right-handed alpha
Helix 38	AE2	C	5	18	Right-handed alpha
Helix 39	AE3	C	21	30	Right-handed alpha
Helix 40	AE4	C	76	95	Right-handed alpha
Helix 41	AE5	C	108	112	Right-handed 310
Helix 42	AE6	C	113	129	Right-handed alpha
Helix 43	AE7	C	130	132	Right-handed 310
Helix 44	AE8	C	146	162	Right-handed alpha
Helix 45	AE9	C	164	168	Right-handed 310
Helix 46	AF1	C	172	176	Right-handed 310
Helix 47	AF2	C	183	199	Right-handed alpha
Helix 48	AF3	C	215	228	Right-handed alpha
Helix 49	AF4	C	249	261	Right-handed alpha
Helix 50	AF5	C	273	280	Right-handed 310
Helix 51	AF6	C	316	325	Right-handed alpha
Helix 52	AF7	C	332	337	Right-handed alpha
Helix 53	AF8	C	338	353	Right-handed alpha
Helix 54	AF9	C	358	385	Right-handed alpha
Helix 55	AG1	C	387	408	Right-handed alpha
Helix 56	AG2	D	6	18	Right-handed alpha
Helix 57	AG3	D	21	30	Right-handed alpha
Helix 58	AG4	D	76	95	Right-handed alpha
Helix 59	AG5	D	108	112	Right-handed 310
Helix 60	AG6	D	113	129	Right-handed alpha
Helix 61	AG7	D	130	132	Right-handed 310
Helix 62	AG8	D	146	162	Right-handed alpha
Helix 63	AG9	D	164	168	Right-handed 310
Helix 64	AH1	D	172	176	Right-handed 310
Helix 65	AH2	D	183	199	Right-handed alpha
Helix 66	AH3	D	215	228	Right-handed alpha
Helix 67	AH4	D	249	261	Right-handed alpha
Helix 68	AH5	D	276	280	Right-handed 310
Helix 69	AH6	D	316	326	Right-handed alpha
Helix 70	AH7	D	332	337	Right-handed alpha
Helix 71	AH8	D	338	354	Right-handed alpha
Helix 72	AH9	D	358	385	Right-handed alpha
Helix 73	AI1	D	387	408	Right-handed alpha
Helix 74	AI2	E	5	18	Right-handed alpha
Helix 75	AI3	E	21	30	Right-handed alpha
Helix 76	AI4	E	76	95	Right-handed alpha
Helix 77	AI5	E	108	112	Right-handed 310
Helix 78	AI6	E	113	129	Right-handed alpha
Helix 79	AI7	E	130	132	Right-handed 310
Helix 80	AI8	E	146	162	Right-handed alpha
Helix 81	AI9	E	164	168	Right-handed 310
Helix 82	AJ1	E	172	176	Right-handed 310
Helix 83	AJ2	E	183	199	Right-handed alpha
Helix 84	AJ3	E	215	228	Right-handed alpha
Helix 85	AJ4	E	249	261	Right-handed alpha
Helix 86	AJ5	E	276	280	Right-handed 310
Helix 87	AJ6	E	295	300	Right-handed alpha
Helix 88	AJ7	E	316	325	Right-handed alpha
Helix 89	AJ8	E	332	337	Right-handed alpha
Helix 90	AJ9	E	338	353	Right-handed alpha
Helix 91	AK1	E	358	385	Right-handed alpha
Helix 92	AK2	E	387	408	Right-handed alpha
Helix 93	AK3	F	5	18	Right-handed alpha
Helix 94	AK4	F	21	30	Right-handed alpha
Helix 95	AK5	F	76	95	Right-handed alpha
Helix 96	AK6	F	108	112	Right-handed 310
Helix 97	AK7	F	113	129	Right-handed alpha
Helix 98	AK8	F	130	132	Right-handed 310
Helix 99	AK9	F	146	162	Right-handed alpha
Helix 100	AL1	F	164	168	Right-handed 310
Helix 101	AL2	F	172	176	Right-handed 310
Helix 102	AL3	F	183	200	Right-handed alpha
Helix 103	AL4	F	215	228	Right-handed alpha
Helix 104	AL5	F	249	260	Right-handed alpha
Helix 105	AL6	F	276	280	Right-handed 310
Helix 106	AL7	F	316	325	Right-handed alpha
Helix 107	AL8	F	326	328	Right-handed 310
Helix 108	AL9	F	332	337	Right-handed alpha
Helix 109	AM1	F	338	354	Right-handed alpha
Helix 110	AM2	F	358	385	Right-handed alpha
Helix 111	AM3	F	387	408	Right-handed alpha

There are 9 sheets in PDB entry 6YEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	65	72	parallel
Strand 3	A	99	106	parallel
Strand 4	A	48	57	anti-parallel
Strand 5	A	33	42	anti-parallel
Strand 6	B	33	42	anti-parallel
Strand 7	B	48	57	anti-parallel
Strand 8	B	99	106	anti-parallel
Strand 9	B	65	72	parallel
Strand 10	B	137	141	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	240	243	anti-parallel
Strand 3	A	231	237	anti-parallel
Strand 4	A	208	212	parallel
Strand 5	A	284	287	parallel
Strand 6	A	306	308	parallel
Strand 7	A	329	331	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	240	243	anti-parallel
Strand 3	B	231	237	anti-parallel
Strand 4	B	208	212	parallel
Strand 5	B	284	287	parallel
Strand 6	B	306	308	parallel
Strand 7	B	329	331	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	65	72	parallel
Strand 3	C	99	106	parallel
Strand 4	C	48	59	anti-parallel
Strand 5	C	33	42	anti-parallel
Strand 6	D	33	42	anti-parallel
Strand 7	D	48	57	anti-parallel
Strand 8	D	99	106	anti-parallel
Strand 9	D	65	72	parallel
Strand 10	D	137	140	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	240	243	anti-parallel
Strand 3	C	231	237	anti-parallel
Strand 4	C	208	212	parallel
Strand 5	C	284	287	parallel
Strand 6	C	306	308	parallel
Strand 7	C	329	331	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	240	243	anti-parallel
Strand 3	D	231	237	anti-parallel
Strand 4	D	208	212	parallel
Strand 5	D	284	287	parallel
Strand 6	D	306	308	parallel
Strand 7	D	329	331	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	65	71	parallel
Strand 3	E	99	105	parallel
Strand 4	E	48	57	anti-parallel
Strand 5	E	33	42	anti-parallel
Strand 6	F	33	42	anti-parallel
Strand 7	F	48	59	anti-parallel
Strand 8	F	99	106	anti-parallel
Strand 9	F	65	72	parallel
Strand 10	F	137	141	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	272	first strand
Strand 2	E	241	243	anti-parallel
Strand 3	E	231	236	anti-parallel
Strand 4	E	208	212	parallel
Strand 5	E	284	287	parallel
Strand 6	E	306	308	parallel
Strand 7	E	329	331	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	240	243	anti-parallel
Strand 3	F	231	237	anti-parallel
Strand 4	F	208	212	parallel
Strand 5	F	284	287	parallel
Strand 6	F	306	308	parallel
Strand 7	F	329	331	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YEH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YEH