Analysis of interatomic Contacts of Structural Units in PDB entry:
6YEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YEO entry

There are 4 chains in PDB entry 6YEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	GLN 361
B	ALA 4	GLN 361
C	ALA 4	GLN 361
D	ALA 4	ASN 237

There are 71 helices in PDB entry 6YEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	24	Right-handed alpha
Helix 2	AA2	A	65	80	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	94	97	Right-handed 310
Helix 5	AA5	A	98	103	Right-handed alpha
Helix 6	AA6	A	105	111	Right-handed alpha
Helix 7	AA7	A	127	137	Right-handed alpha
Helix 8	AA8	A	151	163	Right-handed alpha
Helix 9	AA9	A	164	167	Right-handed 310
Helix 10	AB1	A	169	178	Right-handed alpha
Helix 11	AB2	A	192	199	Right-handed 310
Helix 12	AB3	A	216	221	Right-handed alpha
Helix 13	AB4	A	226	239	Right-handed alpha
Helix 14	AB5	A	240	243	Right-handed 310
Helix 15	AB6	A	245	256	Right-handed alpha
Helix 16	AB7	A	279	287	Right-handed alpha
Helix 17	AB8	A	288	293	Right-handed alpha
Helix 18	AB9	A	330	333	Right-handed 310
Helix 19	AC1	A	345	361	Right-handed alpha
Helix 20	AC2	B	5	24	Right-handed alpha
Helix 21	AC3	B	65	80	Right-handed alpha
Helix 22	AC4	B	88	93	Right-handed alpha
Helix 23	AC5	B	98	102	Right-handed 310
Helix 24	AC6	B	105	111	Right-handed alpha
Helix 25	AC7	B	127	138	Right-handed alpha
Helix 26	AC8	B	151	163	Right-handed alpha
Helix 27	AC9	B	169	178	Right-handed alpha
Helix 28	AD1	B	192	199	Right-handed 310
Helix 29	AD2	B	216	221	Right-handed alpha
Helix 30	AD3	B	226	239	Right-handed alpha
Helix 31	AD4	B	240	243	Right-handed 310
Helix 32	AD5	B	245	256	Right-handed alpha
Helix 33	AD6	B	279	287	Right-handed alpha
Helix 34	AD7	B	288	293	Right-handed alpha
Helix 35	AD8	B	330	333	Right-handed 310
Helix 36	AD9	B	345	361	Right-handed alpha
Helix 37	AE1	C	5	24	Right-handed alpha
Helix 38	AE2	C	65	80	Right-handed alpha
Helix 39	AE3	C	88	92	Right-handed 310
Helix 40	AE4	C	98	102	Right-handed 310
Helix 41	AE5	C	105	111	Right-handed alpha
Helix 42	AE6	C	127	138	Right-handed alpha
Helix 43	AE7	C	151	163	Right-handed alpha
Helix 44	AE8	C	164	167	Right-handed 310
Helix 45	AE9	C	169	178	Right-handed alpha
Helix 46	AF1	C	192	199	Right-handed 310
Helix 47	AF2	C	216	221	Right-handed alpha
Helix 48	AF3	C	226	239	Right-handed alpha
Helix 49	AF4	C	240	243	Right-handed 310
Helix 50	AF5	C	245	256	Right-handed alpha
Helix 51	AF6	C	279	287	Right-handed alpha
Helix 52	AF7	C	288	293	Right-handed alpha
Helix 53	AF8	C	330	333	Right-handed 310
Helix 54	AF9	C	345	361	Right-handed alpha
Helix 55	AG1	D	5	24	Right-handed alpha
Helix 56	AG2	D	65	80	Right-handed alpha
Helix 57	AG3	D	88	92	Right-handed 310
Helix 58	AG4	D	98	102	Right-handed 310
Helix 59	AG5	D	105	111	Right-handed alpha
Helix 60	AG6	D	127	138	Right-handed alpha
Helix 61	AG7	D	151	163	Right-handed alpha
Helix 62	AG8	D	169	178	Right-handed alpha
Helix 63	AG9	D	192	199	Right-handed 310
Helix 64	AH1	D	216	221	Right-handed alpha
Helix 65	AH2	D	226	239	Right-handed alpha
Helix 66	AH3	D	240	243	Right-handed 310
Helix 67	AH4	D	245	256	Right-handed alpha
Helix 68	AH5	D	279	287	Right-handed alpha
Helix 69	AH6	D	288	293	Right-handed alpha
Helix 70	AH7	D	330	333	Right-handed 310
Helix 71	AH8	D	345	360	Right-handed alpha

There are 16 sheets in PDB entry 6YEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	37	47	anti-parallel
Strand 3	A	27	34	anti-parallel
Strand 4	A	334	340	anti-parallel
Strand 5	A	323	329	anti-parallel
Strand 6	A	311	318	anti-parallel
Strand 7	A	272	275	anti-parallel
Strand 8	A	265	267	anti-parallel
Strand 9	A	258	262	anti-parallel
Strand 10	A	299	305	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	224	225	anti-parallel
Strand 3	A	187	188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	296	297	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	207	209	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	37	47	anti-parallel
Strand 3	B	27	34	anti-parallel
Strand 4	B	334	340	anti-parallel
Strand 5	B	323	329	anti-parallel
Strand 6	B	311	318	anti-parallel
Strand 7	B	272	275	anti-parallel
Strand 8	B	265	267	anti-parallel
Strand 9	B	258	262	anti-parallel
Strand 10	B	299	305	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	224	225	anti-parallel
Strand 3	B	187	188	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	296	297	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	207	209	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	37	47	anti-parallel
Strand 3	C	27	34	anti-parallel
Strand 4	C	334	340	anti-parallel
Strand 5	C	323	329	anti-parallel
Strand 6	C	311	318	anti-parallel
Strand 7	C	272	275	anti-parallel
Strand 8	C	265	267	anti-parallel
Strand 9	C	258	262	anti-parallel
Strand 10	C	299	305	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	224	225	anti-parallel
Strand 3	C	187	188	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	296	297	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	207	209	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	37	47	anti-parallel
Strand 3	D	27	34	anti-parallel
Strand 4	D	334	340	anti-parallel
Strand 5	D	323	329	anti-parallel
Strand 6	D	311	318	anti-parallel
Strand 7	D	272	275	anti-parallel
Strand 8	D	265	267	anti-parallel
Strand 9	D	258	262	anti-parallel
Strand 10	D	299	305	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	224	225	anti-parallel
Strand 3	D	187	188	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	296	297	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YEO