Analysis of interatomic Contacts of Structural Units in PDB entry:
6YES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YES entry

There are 2 chains in PDB entry 6YES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14SER 847
B
 LEU 14TYR 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 89 helices in PDB entry 6YES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
26 32Right-handed alpha
Helix 3
AA3
A
41 64Right-handed alpha
Helix 4
AA4
A
64 79Right-handed alpha
Helix 5
AA5
A
81 99Right-handed alpha
Helix 6
AA6
A
110 120Right-handed alpha
Helix 7
AA7
A
122 134Right-handed alpha
Helix 8
AA8
A
142 156Right-handed alpha
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
A
175 185Right-handed alpha
Helix 11
AB2
A
197 211Right-handed alpha
Helix 12
AB3
A
240 252Right-handed alpha
Helix 13
AB4
A
256 273Right-handed alpha
Helix 14
AB5
A
276 281Right-handed alpha
Helix 15
AB6
A
284 290Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
310 315Right-handed alpha
Helix 18
AB9
A
322 327Right-handed alpha
Helix 19
AC1
A
338 349Right-handed alpha
Helix 20
AC2
A
367 372Right-handed alpha
Helix 21
AC3
A
374 376Right-handed 310
Helix 22
AC4
A
377 384Right-handed alpha
Helix 23
AC5
A
387 394Right-handed alpha
Helix 24
AC6
A
396 406Right-handed alpha
Helix 25
AC7
A
478 490Right-handed alpha
Helix 26
AC8
A
507 511Right-handed alpha
Helix 27
AC9
A
532 540Right-handed alpha
Helix 28
AD1
A
555 557Right-handed 310
Helix 29
AD2
A
564 568Right-handed alpha
Helix 30
AD3
A
577 585Right-handed alpha
Helix 31
AD4
A
586 595Right-handed alpha
Helix 32
AD5
A
625 629Right-handed 310
Helix 33
AD6
A
633 655Right-handed alpha
Helix 34
AD7
A
658 678Right-handed alpha
Helix 35
AD8
A
678 684Right-handed alpha
Helix 36
AD9
A
695 700Right-handed alpha
Helix 37
AE1
A
707 719Right-handed alpha
Helix 38
AE2
A
719 740Right-handed alpha
Helix 39
AE3
A
746 763Right-handed alpha
Helix 40
AE4
A
763 768Right-handed alpha
Helix 41
AE5
A
770 790Right-handed alpha
Helix 42
AE6
A
793 817Right-handed alpha
Helix 43
AE7
A
819 844Right-handed alpha
Helix 44
AE8
B
15 25Right-handed alpha
Helix 45
AE9
B
26 32Right-handed alpha
Helix 46
AF1
B
41 64Right-handed alpha
Helix 47
AF2
B
64 79Right-handed alpha
Helix 48
AF3
B
81 99Right-handed alpha
Helix 49
AF4
B
108 110Right-handed 310
Helix 50
AF5
B
111 120Right-handed alpha
Helix 51
AF6
B
122 134Right-handed alpha
Helix 52
AF7
B
139 141Right-handed 310
Helix 53
AF8
B
142 156Right-handed alpha
Helix 54
AF9
B
162 173Right-handed alpha
Helix 55
AG1
B
175 184Right-handed alpha
Helix 56
AG2
B
197 203Right-handed alpha
Helix 57
AG3
B
203 211Right-handed alpha
Helix 58
AG4
B
213 217Right-handed 310
Helix 59
AG5
B
246 253Right-handed alpha
Helix 60
AG6
B
258 272Right-handed alpha
Helix 61
AG7
B
274 281Right-handed alpha
Helix 62
AG8
B
285 290Right-handed alpha
Helix 63
AG9
B
298 303Right-handed alpha
Helix 64
AH1
B
310 315Right-handed alpha
Helix 65
AH2
B
324 328Right-handed 310
Helix 66
AH3
B
338 349Right-handed alpha
Helix 67
AH4
B
367 372Right-handed alpha
Helix 68
AH5
B
374 376Right-handed 310
Helix 69
AH6
B
377 383Right-handed alpha
Helix 70
AH7
B
396 406Right-handed alpha
Helix 71
AH8
B
480 488Right-handed alpha
Helix 72
AH9
B
507 511Right-handed alpha
Helix 73
AI1
B
532 540Right-handed alpha
Helix 74
AI2
B
555 557Right-handed 310
Helix 75
AI3
B
564 568Right-handed alpha
Helix 76
AI4
B
577 585Right-handed alpha
Helix 77
AI5
B
587 595Right-handed alpha
Helix 78
AI6
B
625 629Right-handed 310
Helix 79
AI7
B
633 655Right-handed alpha
Helix 80
AI8
B
656 676Right-handed alpha
Helix 81
AI9
B
678 685Right-handed alpha
Helix 82
AJ1
B
695 704Right-handed alpha
Helix 83
AJ2
B
707 716Right-handed alpha
Helix 84
AJ3
B
719 740Right-handed alpha
Helix 85
AJ4
B
751 762Right-handed alpha
Helix 86
AJ5
B
763 768Right-handed alpha
Helix 87
AJ6
B
770 790Right-handed alpha
Helix 88
AJ7
B
793 817Right-handed alpha
Helix 89
AJ8
B
819 842Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6YES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 193first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
505 506anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 554first strand
Strand 2
A
559 563anti-parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
600 603anti-parallel
Strand 5
A
620 621parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
542 544anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 193first strand
Strand 2
B
227 233anti-parallel
Strand 3
B
222 223anti-parallel
Strand 4
B
505 506anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 554first strand
Strand 2
B
559 563anti-parallel
Strand 3
B
496 500anti-parallel
Strand 4
B
600 603anti-parallel
Strand 5
B
620 621parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 515first strand
Strand 2
B
542 544anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il