Analysis of interatomic Contacts of Structural Units in PDB entry:
6YF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YF6 entry

There are 2 chains in PDB entry 6YF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 144GLY 283
B
 PRO 143LYS 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6YF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 154Right-handed 310
Helix 2
AA2
B
150 154Right-handed 310
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There are 6 sheets in PDB entry 6YF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
B
274 282anti-parallel
Strand 3
B
168 179anti-parallel
Strand 4
A
168 179anti-parallel
Strand 5
A
274 282anti-parallel
Strand 6
B
145 148anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 252first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
274 282anti-parallel
Strand 4
A
168 179anti-parallel
Strand 5
B
168 179anti-parallel
Strand 6
B
274 282anti-parallel
Strand 7
B
204 213anti-parallel
Strand 8
B
245 252anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
B
189 196anti-parallel
Strand 3
B
258 264anti-parallel
Strand 4
B
222 227anti-parallel
Strand 5
B
230 231anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
B
189 196anti-parallel
Strand 3
B
258 264anti-parallel
Strand 4
B
222 227anti-parallel
Strand 5
B
236 237anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
222 227anti-parallel
Strand 3
A
236 237anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
222 227anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
189 197anti-parallel
Strand 5
B
159 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il