Analysis of interatomic Contacts of Structural Units in PDB entry:
6YG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YG1 entry

There are 3 chains in PDB entry 6YG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 102PRO 420
B
 ASP 109PRO 420
C
 SER 102ARG 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6YG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 117Right-handed alpha
Helix 2
AA2
A
132 134Right-handed 310
Helix 3
AA3
A
172 189Right-handed alpha
Helix 4
AA4
A
219 227Right-handed alpha
Helix 5
AA5
A
231 254Right-handed alpha
Helix 6
AA6
A
261 263Right-handed 310
Helix 7
AA7
A
296 300Right-handed 310
Helix 8
AA8
A
301 306Right-handed alpha
Helix 9
AA9
A
317 334Right-handed alpha
Helix 10
AB1
A
343 354Right-handed alpha
Helix 11
AB2
A
360 364Right-handed 310
Helix 12
AB3
A
366 377Right-handed alpha
Helix 13
AB4
A
380 384Right-handed 310
Helix 14
AB5
A
386 391Right-handed alpha
Helix 15
AB6
A
393 402Right-handed alpha
Helix 16
AB7
A
405 417Right-handed alpha
Helix 17
AB8
B
110 117Right-handed alpha
Helix 18
AB9
B
132 134Right-handed 310
Helix 19
AC1
B
172 189Right-handed alpha
Helix 20
AC2
B
219 227Right-handed alpha
Helix 21
AC3
B
231 254Right-handed alpha
Helix 22
AC4
B
261 263Right-handed 310
Helix 23
AC5
B
296 300Right-handed 310
Helix 24
AC6
B
301 306Right-handed alpha
Helix 25
AC7
B
317 334Right-handed alpha
Helix 26
AC8
B
343 354Right-handed alpha
Helix 27
AC9
B
360 364Right-handed 310
Helix 28
AD1
B
366 377Right-handed alpha
Helix 29
AD2
B
380 384Right-handed 310
Helix 30
AD3
B
386 391Right-handed alpha
Helix 31
AD4
B
393 402Right-handed alpha
Helix 32
AD5
B
405 417Right-handed alpha
Helix 33
AD6
C
103 117Right-handed alpha
Helix 34
AD7
C
132 134Right-handed 310
Helix 35
AD8
C
172 189Right-handed alpha
Helix 36
AD9
C
219 227Right-handed alpha
Helix 37
AE1
C
231 254Right-handed alpha
Helix 38
AE2
C
261 263Right-handed 310
Helix 39
AE3
C
296 300Right-handed 310
Helix 40
AE4
C
301 306Right-handed alpha
Helix 41
AE5
C
317 334Right-handed alpha
Helix 42
AE6
C
343 354Right-handed alpha
Helix 43
AE7
C
360 364Right-handed 310
Helix 44
AE8
C
366 377Right-handed alpha
Helix 45
AE9
C
380 384Right-handed 310
Helix 46
AF1
C
386 391Right-handed alpha
Helix 47
AF2
C
393 402Right-handed alpha
Helix 48
AF3
C
405 417Right-handed alpha
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There are 9 sheets in PDB entry 6YG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
198 203anti-parallel
Strand 4
A
207 212anti-parallel
Strand 5
A
161 168anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
136 141anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
265 267anti-parallel
Strand 3
A
273 275anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
282 283anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
121 124anti-parallel
Strand 3
B
198 203anti-parallel
Strand 4
B
207 212anti-parallel
Strand 5
B
161 168anti-parallel
Strand 6
B
150 155anti-parallel
Strand 7
B
136 141anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
265 267anti-parallel
Strand 3
B
273 275anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
282 283anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 130first strand
Strand 2
C
121 124anti-parallel
Strand 3
C
198 203anti-parallel
Strand 4
C
207 212anti-parallel
Strand 5
C
161 168anti-parallel
Strand 6
C
150 155anti-parallel
Strand 7
C
136 141anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
265 267anti-parallel
Strand 3
C
273 275anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 256first strand
Strand 2
C
282 283anti-parallel
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