Analysis of interatomic Contacts of Structural Units in PDB entry:
6YG7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YG7 entry

There are 2 chains in PDB entry 6YG7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 118SER 419
B
 THR 119SER 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6YG7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 134Right-handed 310
Helix 2
AA2
A
173 175Right-handed 310
Helix 3
AA3
A
176 188Right-handed alpha
Helix 4
AA4
A
219 227Right-handed alpha
Helix 5
AA5
A
231 254Right-handed alpha
Helix 6
AA6
A
261 263Right-handed 310
Helix 7
AA7
A
301 306Right-handed alpha
Helix 8
AA8
A
317 334Right-handed alpha
Helix 9
AA9
A
343 354Right-handed alpha
Helix 10
AB1
A
366 377Right-handed alpha
Helix 11
AB2
A
380 384Right-handed 310
Helix 12
AB3
A
386 392Right-handed alpha
Helix 13
AB4
A
393 402Right-handed alpha
Helix 14
AB5
A
405 416Right-handed alpha
Helix 15
AB6
B
132 134Right-handed 310
Helix 16
AB7
B
173 175Right-handed 310
Helix 17
AB8
B
176 188Right-handed alpha
Helix 18
AB9
B
219 227Right-handed alpha
Helix 19
AC1
B
231 254Right-handed alpha
Helix 20
AC2
B
261 263Right-handed 310
Helix 21
AC3
B
301 306Right-handed alpha
Helix 22
AC4
B
317 334Right-handed alpha
Helix 23
AC5
B
343 354Right-handed alpha
Helix 24
AC6
B
366 377Right-handed alpha
Helix 25
AC7
B
380 384Right-handed 310
Helix 26
AC8
B
386 392Right-handed alpha
Helix 27
AC9
B
393 402Right-handed alpha
Helix 28
AD1
B
405 416Right-handed alpha
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There are 6 sheets in PDB entry 6YG7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
127 130anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
207 213anti-parallel
Strand 5
A
198 203anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
265 267anti-parallel
Strand 3
A
273 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
127 131anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 141first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
207 213anti-parallel
Strand 5
B
198 203anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
265 267anti-parallel
Strand 3
B
273 275anti-parallel
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