Analysis of interatomic Contacts of Structural Units in PDB entry:
6YG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YG8 entry

There are 5 chains in PDB entry 6YG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 67	LEU 730
B	ASN 67	GLY 728
C	ASN 67	GLY 728
D	ASN 67	GLY 728
E	ASN 67	LEU 730

There are 68 helices in PDB entry 6YG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed alpha
Helix 2	AA2	A	145	149	Right-handed 310
Helix 3	AA3	A	160	164	Right-handed 310
Helix 4	AA4	A	216	221	Right-handed alpha
Helix 5	AA5	A	240	258	Right-handed alpha
Helix 6	AA6	A	287	291	Right-handed 310
Helix 7	AA7	A	321	334	Right-handed alpha
Helix 8	AA8	A	373	375	Right-handed 310
Helix 9	AA9	A	531	539	Right-handed alpha
Helix 10	AB1	A	539	544	Right-handed alpha
Helix 11	AB2	A	560	579	Right-handed alpha
Helix 12	AB3	A	608	613	Right-handed alpha
Helix 13	AB4	A	684	696	Right-handed alpha
Helix 14	AB5	A	697	702	Right-handed alpha
Helix 15	AB6	B	77	81	Right-handed alpha
Helix 16	AB7	B	145	149	Right-handed 310
Helix 17	AB8	B	240	258	Right-handed alpha
Helix 18	AB9	B	287	291	Right-handed 310
Helix 19	AC1	B	321	336	Right-handed alpha
Helix 20	AC2	B	337	339	Right-handed 310
Helix 21	AC3	B	373	376	Right-handed 310
Helix 22	AC4	B	378	381	Right-handed 310
Helix 23	AC5	B	531	539	Right-handed alpha
Helix 24	AC6	B	539	544	Right-handed alpha
Helix 25	AC7	B	560	579	Right-handed alpha
Helix 26	AC8	B	590	594	Right-handed 310
Helix 27	AC9	B	608	613	Right-handed alpha
Helix 28	AD1	B	684	697	Right-handed alpha
Helix 29	AD2	B	697	702	Right-handed alpha
Helix 30	AD3	C	77	81	Right-handed alpha
Helix 31	AD4	C	145	149	Right-handed 310
Helix 32	AD5	C	212	215	Right-handed 310
Helix 33	AD6	C	216	221	Right-handed alpha
Helix 34	AD7	C	240	258	Right-handed alpha
Helix 35	AD8	C	287	291	Right-handed 310
Helix 36	AD9	C	321	334	Right-handed alpha
Helix 37	AE1	C	372	376	Right-handed alpha
Helix 38	AE2	C	378	381	Right-handed 310
Helix 39	AE3	C	531	539	Right-handed alpha
Helix 40	AE4	C	539	544	Right-handed alpha
Helix 41	AE5	C	560	579	Right-handed alpha
Helix 42	AE6	C	608	613	Right-handed alpha
Helix 43	AE7	C	684	697	Right-handed alpha
Helix 44	AE8	C	697	702	Right-handed alpha
Helix 45	AE9	D	77	81	Right-handed alpha
Helix 46	AF1	D	160	164	Right-handed 310
Helix 47	AF2	D	240	258	Right-handed alpha
Helix 48	AF3	D	321	334	Right-handed alpha
Helix 49	AF4	D	372	376	Right-handed alpha
Helix 50	AF5	D	379	381	Right-handed 310
Helix 51	AF6	D	531	538	Right-handed alpha
Helix 52	AF7	D	539	544	Right-handed alpha
Helix 53	AF8	D	562	579	Right-handed alpha
Helix 54	AF9	D	591	595	Right-handed 310
Helix 55	AG1	D	608	613	Right-handed alpha
Helix 56	AG2	D	684	697	Right-handed alpha
Helix 57	AG3	D	697	702	Right-handed alpha
Helix 58	AG4	E	145	149	Right-handed 310
Helix 59	AG5	E	212	216	Right-handed 310
Helix 60	AG6	E	240	258	Right-handed alpha
Helix 61	AG7	E	287	291	Right-handed 310
Helix 62	AG8	E	321	334	Right-handed alpha
Helix 63	AG9	E	373	375	Right-handed 310
Helix 64	AH1	E	531	537	Right-handed alpha
Helix 65	AH2	E	539	544	Right-handed alpha
Helix 66	AH3	E	560	579	Right-handed alpha
Helix 67	AH4	E	685	697	Right-handed alpha
Helix 68	AH5	E	697	702	Right-handed alpha

There are 55 sheets in PDB entry 6YG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	76	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	106	119	anti-parallel
Strand 4	A	191	194	anti-parallel
Strand 5	A	87	90	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	76	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	106	119	anti-parallel
Strand 4	A	153	159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	101	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	137	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	263	264	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	233	235	parallel
Strand 3	A	277	281	parallel
Strand 4	A	309	318	parallel
Strand 5	A	300	306	anti-parallel
Strand 6	A	343	350	anti-parallel
Strand 7	B	649	657	anti-parallel
Strand 8	B	625	631	anti-parallel
Strand 9	B	619	621	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	517	519	anti-parallel
Strand 3	A	409	418	anti-parallel
Strand 4	A	508	512	anti-parallel
Strand 5	A	383	386	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	517	519	anti-parallel
Strand 3	A	409	418	anti-parallel
Strand 4	A	466	472	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	397	first strand
Strand 2	A	479	487	anti-parallel
Strand 3	A	428	433	anti-parallel
Strand 4	A	436	442	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	495	first strand
Strand 2	C	500	502	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	B	492	493	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	A	725	728	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	551	554	parallel
Strand 3	A	600	603	parallel
Strand 4	A	672	682	parallel
Strand 5	A	662	669	anti-parallel
Strand 6	A	708	711	anti-parallel
Strand 7	A	716	717	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	621	first strand
Strand 2	A	625	631	anti-parallel
Strand 3	A	649	657	anti-parallel
Strand 4	C	343	351	anti-parallel
Strand 5	C	300	305	anti-parallel
Strand 6	C	313	317	anti-parallel
Strand 7	C	277	280	parallel
Strand 8	C	233	235	parallel
Strand 9	C	267	269	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	76	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	106	119	anti-parallel
Strand 4	B	191	194	anti-parallel
Strand 5	B	87	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	76	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	106	119	anti-parallel
Strand 4	B	153	158	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	167	175	anti-parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	138	143	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	263	264	parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	233	235	parallel
Strand 3	B	277	282	parallel
Strand 4	B	309	319	parallel
Strand 5	B	300	306	anti-parallel
Strand 6	B	343	351	anti-parallel
Strand 7	D	649	657	anti-parallel
Strand 8	D	625	631	anti-parallel
Strand 9	D	619	621	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	517	519	anti-parallel
Strand 3	B	410	418	anti-parallel
Strand 4	B	508	513	anti-parallel
Strand 5	B	383	386	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	517	519	anti-parallel
Strand 3	B	410	418	anti-parallel
Strand 4	B	467	471	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	397	first strand
Strand 2	B	479	484	anti-parallel
Strand 3	B	428	433	anti-parallel
Strand 4	B	437	442	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	725	727	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	551	554	parallel
Strand 3	B	600	603	parallel
Strand 4	B	676	682	parallel
Strand 5	B	662	668	anti-parallel
Strand 6	B	708	711	anti-parallel
Strand 7	B	716	719	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	76	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	106	119	anti-parallel
Strand 4	C	192	194	anti-parallel
Strand 5	C	87	89	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	76	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	106	119	anti-parallel
Strand 4	C	153	158	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	101	first strand
Strand 2	C	167	175	anti-parallel
Strand 3	C	129	134	anti-parallel
Strand 4	C	138	143	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	263	264	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	517	518	anti-parallel
Strand 3	C	410	418	anti-parallel
Strand 4	C	508	512	anti-parallel
Strand 5	C	383	386	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	517	518	anti-parallel
Strand 3	C	410	418	anti-parallel
Strand 4	C	466	471	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	397	first strand
Strand 2	C	479	484	anti-parallel
Strand 3	C	428	433	anti-parallel
Strand 4	C	437	442	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	493	first strand
Strand 2	E	501	502	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	725	727	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	588	first strand
Strand 2	C	551	554	parallel
Strand 3	C	600	603	parallel
Strand 4	C	676	682	parallel
Strand 5	C	662	668	anti-parallel
Strand 6	C	708	712	anti-parallel
Strand 7	C	715	719	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	625	631	anti-parallel
Strand 3	C	649	656	anti-parallel
Strand 4	E	343	351	anti-parallel
Strand 5	E	300	306	anti-parallel
Strand 6	E	309	318	anti-parallel
Strand 7	E	277	281	parallel
Strand 8	E	233	235	parallel
Strand 9	E	267	269	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	76	first strand
Strand 2	D	199	206	anti-parallel
Strand 3	D	106	119	anti-parallel
Strand 4	D	191	194	anti-parallel
Strand 5	D	87	90	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	76	first strand
Strand 2	D	199	206	anti-parallel
Strand 3	D	106	119	anti-parallel
Strand 4	D	153	159	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	101	first strand
Strand 2	D	167	175	anti-parallel
Strand 3	D	129	134	anti-parallel
Strand 4	D	138	143	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	263	264	parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	269	first strand
Strand 2	D	233	235	parallel
Strand 3	D	277	282	parallel
Strand 4	D	309	319	parallel
Strand 5	D	300	306	anti-parallel
Strand 6	D	343	345	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	517	519	anti-parallel
Strand 3	D	410	414	anti-parallel
Strand 4	D	467	471	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	386	first strand
Strand 2	D	508	511	anti-parallel
Strand 3	D	417	418	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	397	first strand
Strand 2	D	479	484	anti-parallel
Strand 3	D	428	433	anti-parallel
Strand 4	D	437	442	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	524	525	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	500	501	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	528	first strand
Strand 2	D	726	727	anti-parallel

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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	588	first strand
Strand 2	D	551	554	parallel
Strand 3	D	600	603	parallel
Strand 4	D	676	682	parallel
Strand 5	D	662	668	anti-parallel
Strand 6	D	708	711	anti-parallel
Strand 7	D	716	719	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	74	first strand
Strand 2	E	201	206	anti-parallel
Strand 3	E	106	119	anti-parallel
Strand 4	E	191	194	anti-parallel
Strand 5	E	89	90	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	74	first strand
Strand 2	E	201	206	anti-parallel
Strand 3	E	106	119	anti-parallel
Strand 4	E	153	158	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	101	first strand
Strand 2	E	167	175	anti-parallel
Strand 3	E	129	134	anti-parallel
Strand 4	E	138	143	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	230	first strand
Strand 2	E	263	264	parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	371	first strand
Strand 2	E	510	519	anti-parallel
Strand 3	E	383	384	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	371	first strand
Strand 2	E	510	519	anti-parallel
Strand 3	E	411	418	anti-parallel
Strand 4	E	466	470	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	392	397	first strand
Strand 2	E	479	484	anti-parallel
Strand 3	E	428	433	anti-parallel
Strand 4	E	436	442	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	529	first strand
Strand 2	E	725	727	anti-parallel

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There are 6 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	588	first strand
Strand 2	E	551	554	parallel
Strand 3	E	600	603	parallel
Strand 4	E	676	682	parallel
Strand 5	E	662	668	anti-parallel
Strand 6	E	708	709	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 6YG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YG8