Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YGE entry

There are 2 chains in PDB entry 6YGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 27GLN 234
A
 ASP 26ASN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
30 34Right-handed 310
Helix 2
AA2
B
48 56Right-handed 310
Helix 3
AA3
B
65 71Right-handed alpha
Helix 4
AA4
B
80 89Right-handed alpha
Helix 5
AA5
B
102 106Right-handed 310
Helix 6
AA6
B
144 149Right-handed 310
Helix 7
AA7
B
151 156Right-handed 310
Helix 8
AA8
B
162 164Right-handed 310
Helix 9
AA9
B
200 207Right-handed alpha
Helix 10
AB1
B
214 218Right-handed 310
Helix 11
AB2
B
220 225Right-handed 310
Helix 12
AB3
A
30 34Right-handed 310
Helix 13
AB4
A
48 56Right-handed 310
Helix 14
AB5
A
65 71Right-handed alpha
Helix 15
AB6
A
80 89Right-handed alpha
Helix 16
AB7
A
102 106Right-handed 310
Helix 17
AB8
A
144 149Right-handed 310
Helix 18
AB9
A
151 156Right-handed 310
Helix 19
AC1
A
162 164Right-handed 310
Helix 20
AC2
A
200 207Right-handed alpha
Helix 21
AC3
A
214 218Right-handed 310
Helix 22
AC4
A
220 225Right-handed 310
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There are 2 sheets in PDB entry 6YGE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
175 181anti-parallel
Strand 3
B
193 196anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
126 130anti-parallel
Strand 6
B
166 171anti-parallel
Strand 7
B
210 212anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
193 196anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
126 130anti-parallel
Strand 6
A
166 171anti-parallel
Strand 7
A
210 212anti-parallel
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