Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YGI entry

There are 6 chains in PDB entry 6YGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 250LYS 262
H
 SER 250LYS 262
A
 MET 1ALA 188
B
 ILE 3ILE 193
C
 MET 1ALA 196
D
 MET 1PRO 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6YGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
22 40Right-handed alpha
Helix 4
AA4
A
44 78Right-handed alpha
Helix 5
AA5
A
122 156Right-handed alpha
Helix 6
AA6
A
157 174Right-handed alpha
Helix 7
AA7
B
4 14Right-handed alpha
Helix 8
AA8
B
22 41Right-handed alpha
Helix 9
AA9
B
44 78Right-handed alpha
Helix 10
AB1
B
122 156Right-handed alpha
Helix 11
AB2
B
157 174Right-handed alpha
Helix 12
AB3
B
186 191Right-handed alpha
Helix 13
AB4
C
2 13Right-handed alpha
Helix 14
AB5
C
22 40Right-handed alpha
Helix 15
AB6
C
44 78Right-handed alpha
Helix 16
AB7
C
123 156Right-handed alpha
Helix 17
AB8
C
157 174Right-handed alpha
Helix 18
AB9
D
2 10Right-handed alpha
Helix 19
AC1
D
11 15Right-handed 310
Helix 20
AC2
D
22 40Right-handed alpha
Helix 21
AC3
D
44 78Right-handed alpha
Helix 22
AC4
D
122 156Right-handed alpha
Helix 23
AC5
D
157 174Right-handed alpha
Helix 24
AC6
D
175 180Right-handed alpha
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There are no sheets in PDB entry 6YGI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il