Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YGJ entry

There are 4 chains in PDB entry 6YGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4SER 232
B
 ARG 117GLN 136
F
 THR 2SER 232
I
 ARG 117GLN 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6YGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
20 34Right-handed alpha
Helix 3
AA3
A
39 71Right-handed alpha
Helix 4
AA4
A
75 106Right-handed alpha
Helix 5
AA5
A
113 133Right-handed alpha
Helix 6
AA6
A
136 162Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 203Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
212 231Right-handed alpha
Helix 11
AB2
B
119 135Right-handed alpha
Helix 12
AB3
F
4 18Right-handed alpha
Helix 13
AB4
F
20 34Right-handed alpha
Helix 14
AB5
F
39 69Right-handed alpha
Helix 15
AB6
F
76 106Right-handed alpha
Helix 16
AB7
F
106 111Right-handed alpha
Helix 17
AB8
F
113 133Right-handed alpha
Helix 18
AB9
F
137 162Right-handed alpha
Helix 19
AC1
F
166 183Right-handed alpha
Helix 20
AC2
F
186 204Right-handed alpha
Helix 21
AC3
F
209 211Right-handed 310
Helix 22
AC4
F
212 230Right-handed alpha
Helix 23
AC5
I
118 135Right-handed alpha
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There are no sheets in PDB entry 6YGJ
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