Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YGN entry

There are 2 chains in PDB entry 6YGN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	TYR 553
B	ALA 5	TYR 553

There are 37 helices in PDB entry 6YGN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	114	Right-handed alpha
Helix 2	AA2	A	130	136	Right-handed alpha
Helix 3	AA3	A	173	188	Right-handed alpha
Helix 4	AA4	A	217	223	Right-handed alpha
Helix 5	AA5	A	230	251	Right-handed alpha
Helix 6	AA6	A	259	261	Right-handed 310
Helix 7	AA7	A	296	300	Right-handed 310
Helix 8	AA8	A	301	306	Right-handed alpha
Helix 9	AA9	A	312	329	Right-handed alpha
Helix 10	AB1	A	337	347	Right-handed alpha
Helix 11	AB2	A	353	358	Right-handed alpha
Helix 12	AB3	A	361	370	Right-handed alpha
Helix 13	AB4	A	375	379	Right-handed 310
Helix 14	AB5	A	381	388	Right-handed alpha
Helix 15	AB6	A	388	393	Right-handed alpha
Helix 16	AB7	A	394	398	Right-handed 310
Helix 17	AB8	A	405	417	Right-handed alpha
Helix 18	AB9	A	424	432	Right-handed 310
Helix 19	AC1	A	518	522	Right-handed 310
Helix 20	AC2	B	100	112	Right-handed alpha
Helix 21	AC3	B	132	136	Right-handed alpha
Helix 22	AC4	B	173	188	Right-handed alpha
Helix 23	AC5	B	217	223	Right-handed alpha
Helix 24	AC6	B	230	251	Right-handed alpha
Helix 25	AC7	B	259	261	Right-handed 310
Helix 26	AC8	B	296	300	Right-handed 310
Helix 27	AC9	B	301	306	Right-handed alpha
Helix 28	AD1	B	311	329	Right-handed alpha
Helix 29	AD2	B	337	347	Right-handed alpha
Helix 30	AD3	B	361	370	Right-handed alpha
Helix 31	AD4	B	375	379	Right-handed 310
Helix 32	AD5	B	381	386	Right-handed alpha
Helix 33	AD6	B	388	393	Right-handed alpha
Helix 34	AD7	B	394	398	Right-handed 310
Helix 35	AD8	B	405	417	Right-handed alpha
Helix 36	AD9	B	424	432	Right-handed 310
Helix 37	AE1	B	518	522	Right-handed 310

There are 16 sheets in PDB entry 6YGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	20	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	64	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	60	first strand
Strand 2	A	41	48	anti-parallel
Strand 3	A	76	84	anti-parallel
Strand 4	A	87	88	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	196	201	parallel
Strand 3	A	205	211	anti-parallel
Strand 4	A	161	169	anti-parallel
Strand 5	A	149	156	anti-parallel
Strand 6	A	137	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	282	283	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	265	first strand
Strand 2	A	273	275	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	442	448	anti-parallel
Strand 3	A	309	310	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	471	478	anti-parallel
Strand 3	A	509	514	anti-parallel
Strand 4	A	501	506	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	534	544	parallel
Strand 3	A	523	531	anti-parallel
Strand 4	A	485	490	anti-parallel
Strand 5	A	493	494	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	64	70	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	60	first strand
Strand 2	B	41	48	anti-parallel
Strand 3	B	76	84	anti-parallel
Strand 4	B	87	88	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	196	201	parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	161	168	anti-parallel
Strand 5	B	149	156	anti-parallel
Strand 6	B	137	145	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	282	283	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	273	275	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	442	448	anti-parallel
Strand 3	B	309	310	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	471	478	anti-parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	501	506	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	534	544	parallel
Strand 3	B	523	531	anti-parallel
Strand 4	B	485	490	anti-parallel
Strand 5	B	493	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YGN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGN