Analysis of interatomic Contacts of Structural Units in PDB entry:
6YGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YGU entry

There are 4 chains in PDB entry 6YGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 654ASN 864
B
 TYR 1017ALA 1082
C
 MET 653GLY 867
D
 TYR 1017ALA 1081
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6YGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
655 681Right-handed alpha
Helix 2
AA2
A
681 686Right-handed alpha
Helix 3
AA3
A
687 689Right-handed 310
Helix 4
AA4
A
728 731Right-handed 310
Helix 5
AA5
A
805 823Right-handed alpha
Helix 6
AA6
A
840 860Right-handed alpha
Helix 7
AA7
B
1024 1030Right-handed 310
Helix 8
AA8
B
1032 1037Right-handed alpha
Helix 9
AA9
B
1039 1047Right-handed 310
Helix 10
AB1
B
1057 1063Right-handed alpha
Helix 11
AB2
B
1074 1079Right-handed alpha
Helix 12
AB3
C
655 681Right-handed alpha
Helix 13
AB4
C
681 686Right-handed alpha
Helix 14
AB5
C
687 689Right-handed 310
Helix 15
AB6
C
728 731Right-handed 310
Helix 16
AB7
C
801 804Right-handed 310
Helix 17
AB8
C
805 823Right-handed alpha
Helix 18
AB9
C
840 860Right-handed alpha
Helix 19
AC1
D
1024 1030Right-handed 310
Helix 20
AC2
D
1032 1037Right-handed alpha
Helix 21
AC3
D
1039 1043Right-handed 310
Helix 22
AC4
D
1057 1062Right-handed alpha
Helix 23
AC5
D
1074 1079Right-handed alpha
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There are 2 sheets in PDB entry 6YGU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 780first strand
Strand 2
A
733 741anti-parallel
Strand 3
A
704 715anti-parallel
Strand 4
A
693 698anti-parallel
Strand 5
A
784 791anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
773 780first strand
Strand 2
C
733 741anti-parallel
Strand 3
C
704 715anti-parallel
Strand 4
C
693 698anti-parallel
Strand 5
C
784 792anti-parallel
Strand 6
D
1055 1056parallel
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