Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YHH entry

There are 2 chains in PDB entry 6YHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ALA 673
B
 GLN 1ALA 673
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 6YHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
40 57Right-handed alpha
Helix 3
AA3
A
110 124Right-handed alpha
Helix 4
AA4
A
159 173Right-handed alpha
Helix 5
AA5
A
196 203Right-handed alpha
Helix 6
AA6
A
209 223Right-handed alpha
Helix 7
AA7
A
237 244Right-handed alpha
Helix 8
AA8
A
245 248Right-handed 310
Helix 9
AA9
A
288 303Right-handed alpha
Helix 10
AB1
A
304 306Right-handed 310
Helix 11
AB2
A
320 326Right-handed alpha
Helix 12
AB3
A
326 336Right-handed alpha
Helix 13
AB4
A
340 359Right-handed alpha
Helix 14
AB5
A
368 370Right-handed 310
Helix 15
AB6
A
385 389Right-handed 310
Helix 16
AB7
A
393 402Right-handed alpha
Helix 17
AB8
A
413 417Right-handed 310
Helix 18
AB9
A
419 425Right-handed alpha
Helix 19
AC1
A
436 442Right-handed alpha
Helix 20
AC2
A
459 465Right-handed alpha
Helix 21
AC3
A
466 477Right-handed alpha
Helix 22
AC4
A
483 498Right-handed alpha
Helix 23
AC5
A
499 502Right-handed 310
Helix 24
AC6
A
506 518Right-handed alpha
Helix 25
AC7
A
522 530Right-handed alpha
Helix 26
AC8
A
541 545Right-handed 310
Helix 27
AC9
A
555 560Right-handed alpha
Helix 28
AD1
A
564 580Right-handed alpha
Helix 29
AD2
A
582 608Right-handed alpha
Helix 30
AD3
A
609 614Right-handed 310
Helix 31
AD4
A
616 635Right-handed alpha
Helix 32
AD5
A
641 651Right-handed alpha
Helix 33
AD6
A
652 654Right-handed 310
Helix 34
AD7
A
664 672Right-handed alpha
Helix 35
AD8
B
3 7Right-handed 310
Helix 36
AD9
B
39 57Right-handed alpha
Helix 37
AE1
B
110 124Right-handed alpha
Helix 38
AE2
B
159 173Right-handed alpha
Helix 39
AE3
B
196 203Right-handed alpha
Helix 40
AE4
B
209 223Right-handed alpha
Helix 41
AE5
B
237 244Right-handed alpha
Helix 42
AE6
B
245 248Right-handed 310
Helix 43
AE7
B
288 303Right-handed alpha
Helix 44
AE8
B
304 306Right-handed 310
Helix 45
AE9
B
320 326Right-handed alpha
Helix 46
AF1
B
326 336Right-handed alpha
Helix 47
AF2
B
340 359Right-handed alpha
Helix 48
AF3
B
368 370Right-handed 310
Helix 49
AF4
B
385 389Right-handed 310
Helix 50
AF5
B
393 403Right-handed alpha
Helix 51
AF6
B
413 417Right-handed 310
Helix 52
AF7
B
419 425Right-handed alpha
Helix 53
AF8
B
436 442Right-handed alpha
Helix 54
AF9
B
459 465Right-handed alpha
Helix 55
AG1
B
466 477Right-handed alpha
Helix 56
AG2
B
483 498Right-handed alpha
Helix 57
AG3
B
499 502Right-handed 310
Helix 58
AG4
B
506 518Right-handed alpha
Helix 59
AG5
B
522 530Right-handed alpha
Helix 60
AG6
B
541 545Right-handed 310
Helix 61
AG7
B
555 560Right-handed alpha
Helix 62
AG8
B
564 580Right-handed alpha
Helix 63
AG9
B
582 608Right-handed alpha
Helix 64
AH1
B
609 615Right-handed 310
Helix 65
AH2
B
616 635Right-handed alpha
Helix 66
AH3
B
641 651Right-handed alpha
Helix 67
AH4
B
652 654Right-handed 310
Helix 68
AH5
B
664 672Right-handed alpha
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There are 10 sheets in PDB entry 6YHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 24first strand
Strand 2
A
131 140anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
102 109anti-parallel
Strand 5
A
76 82parallel
Strand 6
A
31 35parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 24first strand
Strand 2
A
131 140anti-parallel
Strand 3
A
125 126anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 152first strand
Strand 2
A
177 181parallel
Strand 3
A
226 230parallel
Strand 4
A
310 312parallel
Strand 5
A
362 366parallel
Strand 6
A
379 382parallel
Strand 7
A
406 408parallel
Strand 8
A
443 450parallel
Strand 9
A
146 152parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
187 188anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 534first strand
Strand 2
A
660 662anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 24first strand
Strand 2
B
131 140anti-parallel
Strand 3
B
94 98anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
76 82parallel
Strand 6
B
31 35parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 24first strand
Strand 2
B
131 140anti-parallel
Strand 3
B
125 126anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 152first strand
Strand 2
B
177 181parallel
Strand 3
B
226 230parallel
Strand 4
B
310 312parallel
Strand 5
B
362 366parallel
Strand 6
B
379 382parallel
Strand 7
B
406 408parallel
Strand 8
B
443 450parallel
Strand 9
B
146 152parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
187 188anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 534first strand
Strand 2
B
660 662anti-parallel
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