Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YHK entry

There is 1 chain in PDB entry 6YHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ALA 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6YHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 19Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
81 87Right-handed alpha
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 102Right-handed alpha
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
135 173Right-handed alpha
Helix 9
AA9
A
177 187Right-handed alpha
Helix 10
AB1
A
235 248Right-handed alpha
Helix 11
AB2
A
249 258Right-handed alpha
Helix 12
AB3
A
261 266Right-handed alpha
Helix 13
AB4
A
273 283Right-handed alpha
Helix 14
AB5
A
287 291Right-handed 310
Helix 15
AB6
A
302 325Right-handed alpha
Helix 16
AB7
A
332 337Right-handed 310
Helix 17
AB8
A
338 343Right-handed alpha
Helix 18
AB9
A
357 362Right-handed 310
Helix 19
AC1
A
372 378Right-handed alpha
Helix 20
AC2
A
381 388Right-handed alpha
Helix 21
AC3
A
396 401Right-handed alpha
Helix 22
AC4
A
402 423Right-handed alpha
Helix 23
AC5
A
433 441Right-handed alpha
Helix 24
AC6
A
444 448Right-handed 310
Helix 25
AC7
A
543 547Right-handed 310
Helix 26
AC8
A
576 586Right-handed alpha
Helix 27
AC9
A
586 591Right-handed alpha
Helix 28
AD1
A
602 613Right-handed alpha
Helix 29
AD2
A
643 652Right-handed alpha
Helix 30
AD3
A
664 666Right-handed 310
Helix 31
AD4
A
719 734Right-handed alpha
Helix 32
AD5
A
736 741Right-handed 310
Helix 33
AD6
A
784 786Right-handed 310
Helix 34
AD7
A
848 850Right-handed 310
Helix 35
AD8
A
894 908Right-handed alpha
Helix 36
AD9
A
920 932Right-handed alpha
Helix 37
AE1
A
945 949Right-handed 310
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There are 10 sheets in PDB entry 6YHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
103 106anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
113 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 202first strand
Strand 2
A
205 214anti-parallel
Strand 3
A
219 222anti-parallel
Strand 4
A
230 233anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
369 371anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
464 469anti-parallel
Strand 3
A
477 482anti-parallel
Strand 4
A
488 492anti-parallel
Strand 5
A
499 510anti-parallel
Strand 6
A
513 517anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
686 692parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
594 601anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 641first strand
Strand 2
A
676 680anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
838 846anti-parallel
Strand 4
A
876 884anti-parallel
Strand 5
A
867 873anti-parallel
Strand 6
A
934 940anti-parallel
Strand 7
A
957 963parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
797 798anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 804first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
856 859parallel
Strand 4
A
971 982anti-parallel
Strand 5
A
985 997anti-parallel
Strand 6
A
1004 1013anti-parallel
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