Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YHL entry

There are 2 chains in PDB entry 6YHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	PHE 697
B	MET 1	PRO 698

There are 54 helices in PDB entry 6YHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	19	Right-handed alpha
Helix 2	AA2	A	22	37	Right-handed alpha
Helix 3	AA3	A	39	43	Right-handed 310
Helix 4	AA4	A	81	87	Right-handed alpha
Helix 5	AA5	A	88	93	Right-handed 310
Helix 6	AA6	A	95	102	Right-handed alpha
Helix 7	AA7	A	123	133	Right-handed alpha
Helix 8	AA8	A	135	173	Right-handed alpha
Helix 9	AA9	A	177	187	Right-handed alpha
Helix 10	AB1	A	235	247	Right-handed alpha
Helix 11	AB2	A	249	258	Right-handed alpha
Helix 12	AB3	A	261	266	Right-handed alpha
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	302	325	Right-handed alpha
Helix 15	AB6	A	332	334	Right-handed 310
Helix 16	AB7	A	335	343	Right-handed alpha
Helix 17	AB8	A	357	362	Right-handed 310
Helix 18	AB9	A	372	377	Right-handed alpha
Helix 19	AC1	A	381	388	Right-handed alpha
Helix 20	AC2	A	396	401	Right-handed alpha
Helix 21	AC3	A	402	422	Right-handed alpha
Helix 22	AC4	A	433	441	Right-handed alpha
Helix 23	AC5	A	576	586	Right-handed alpha
Helix 24	AC6	A	586	591	Right-handed alpha
Helix 25	AC7	A	602	613	Right-handed alpha
Helix 26	AC8	A	643	652	Right-handed alpha
Helix 27	AC9	B	3	19	Right-handed alpha
Helix 28	AD1	B	22	37	Right-handed alpha
Helix 29	AD2	B	39	43	Right-handed 310
Helix 30	AD3	B	81	87	Right-handed alpha
Helix 31	AD4	B	88	93	Right-handed 310
Helix 32	AD5	B	95	97	Right-handed 310
Helix 33	AD6	B	98	102	Right-handed alpha
Helix 34	AD7	B	123	133	Right-handed alpha
Helix 35	AD8	B	135	173	Right-handed alpha
Helix 36	AD9	B	177	187	Right-handed alpha
Helix 37	AE1	B	235	247	Right-handed alpha
Helix 38	AE2	B	249	258	Right-handed alpha
Helix 39	AE3	B	261	266	Right-handed alpha
Helix 40	AE4	B	273	284	Right-handed alpha
Helix 41	AE5	B	287	291	Right-handed 310
Helix 42	AE6	B	302	325	Right-handed alpha
Helix 43	AE7	B	332	334	Right-handed 310
Helix 44	AE8	B	335	343	Right-handed alpha
Helix 45	AE9	B	357	362	Right-handed 310
Helix 46	AF1	B	372	377	Right-handed alpha
Helix 47	AF2	B	381	388	Right-handed alpha
Helix 48	AF3	B	396	401	Right-handed alpha
Helix 49	AF4	B	402	422	Right-handed alpha
Helix 50	AF5	B	433	441	Right-handed alpha
Helix 51	AF6	B	576	586	Right-handed alpha
Helix 52	AF7	B	586	591	Right-handed alpha
Helix 53	AF8	B	602	613	Right-handed alpha
Helix 54	AF9	B	643	652	Right-handed alpha

There are 14 sheets in PDB entry 6YHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	51	55	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	68	71	anti-parallel
Strand 3	A	113	114	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	202	first strand
Strand 2	A	205	214	anti-parallel
Strand 3	A	219	222	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	370	371	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	477	482	anti-parallel
Strand 4	A	488	492	anti-parallel
Strand 5	A	499	510	anti-parallel
Strand 6	A	513	517	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	686	692	parallel
Strand 3	A	655	662	anti-parallel
Strand 4	A	594	601	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	641	first strand
Strand 2	A	676	680	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	103	106	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	68	71	anti-parallel
Strand 3	B	113	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	202	first strand
Strand 2	B	205	214	anti-parallel
Strand 3	B	219	222	anti-parallel
Strand 4	B	230	233	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	370	371	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	464	469	anti-parallel
Strand 3	B	477	482	anti-parallel
Strand 4	B	488	492	anti-parallel
Strand 5	B	499	510	anti-parallel
Strand 6	B	513	517	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	540	first strand
Strand 2	B	686	692	parallel
Strand 3	B	655	662	anti-parallel
Strand 4	B	594	601	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	641	first strand
Strand 2	B	676	680	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHL