Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YHN entry

There are 2 chains in PDB entry 6YHN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 524GLY 865
A
 THR 867ALA 1016
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6YHN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
543 547Right-handed 310
Helix 2
AA2
A
576 586Right-handed alpha
Helix 3
AA3
A
586 591Right-handed alpha
Helix 4
AA4
A
602 613Right-handed alpha
Helix 5
AA5
A
621 627Right-handed 310
Helix 6
AA6
A
643 652Right-handed alpha
Helix 7
AA7
A
664 666Right-handed 310
Helix 8
AA8
A
720 734Right-handed alpha
Helix 9
AA9
A
736 741Right-handed 310
Helix 10
AB1
A
784 786Right-handed 310
Helix 11
AB2
A
817 822Right-handed alpha
Helix 12
AB3
A
848 850Right-handed 310
Helix 13
AB4
A
894 908Right-handed alpha
Helix 14
AB5
A
920 932Right-handed alpha
Helix 15
AB6
A
945 949Right-handed 310
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There are 5 sheets in PDB entry 6YHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 540first strand
Strand 2
A
686 692parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
594 601anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 641first strand
Strand 2
A
676 680anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
838 846anti-parallel
Strand 4
A
876 884anti-parallel
Strand 5
A
867 873anti-parallel
Strand 6
A
934 940anti-parallel
Strand 7
A
957 963parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
797 798anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 805first strand
Strand 2
A
825 833anti-parallel
Strand 3
A
856 859parallel
Strand 4
A
972 982anti-parallel
Strand 5
A
985 996anti-parallel
Strand 6
A
1005 1013anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il