Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YHS entry

There are 31 chains in PDB entry 6YHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	G 2	U 2891
5	G 2	U 116
6	G 2	G 6
8	C 69	A 76
A	PRO 2	VAL 273
B	ALA 2	ALA 212
C	ASN 2	GLY 200
D	ALA 2	PHE 177
E	SER 2	LYS 176
F	MET 1	ILE 142
G	MET 1	LEU 122
H	THR 2	GLU 145
I	MET 1	MET 137
J	MET 1	GLU 119
K	ASN 2	PHE 116
L	SER 2	PRO 118
M	ALA 2	ALA 118
N	MET 1	GLY 103
O	MET 2	VAL 110
P	MET 1	VAL 92
Q	ALA 2	VAL 103
R	ASN 3	ALA 98
S	SER 9	THR 84
T	SER 2	ILE 78
U	LYS 2	GLY 62
V	MET 1	GLU 57
X	ALA 2	ALA 55
Y	MET 1	LYS 51
Z	MET 1	VAL 44
a	ALA 2	ILE 64
b	MET 1	GLY 38

There are 90 helices in PDB entry 6YHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	32	Right-handed 310
Helix 2	AA2	A	133	135	Right-handed 310
Helix 3	AA3	A	199	203	Right-handed 310
Helix 4	AA4	A	207	213	Right-handed alpha
Helix 5	AA5	A	221	225	Right-handed 310
Helix 6	AA6	B	57	61	Right-handed 310
Helix 7	AA7	B	62	72	Right-handed alpha
Helix 8	AA8	B	100	104	Right-handed 310
Helix 9	AA9	B	123	128	Right-handed alpha
Helix 10	AB1	C	14	19	Right-handed alpha
Helix 11	AB2	C	23	37	Right-handed alpha
Helix 12	AB3	C	96	114	Right-handed alpha
Helix 13	AB4	C	129	137	Right-handed alpha
Helix 14	AB5	C	138	141	Right-handed 310
Helix 15	AB6	C	153	160	Right-handed alpha
Helix 16	AB7	C	175	182	Right-handed alpha
Helix 17	AB8	C	189	200	Right-handed alpha
Helix 18	AB9	D	5	10	Right-handed alpha
Helix 19	AC1	D	11	20	Right-handed alpha
Helix 20	AC2	D	40	45	Right-handed 310
Helix 21	AC3	D	47	54	Right-handed alpha
Helix 22	AC4	D	56	61	Right-handed alpha
Helix 23	AC5	D	96	100	Right-handed 310
Helix 24	AC6	D	107	111	Right-handed 310
Helix 25	AC7	D	134	138	Right-handed 310
Helix 26	AC8	D	162	172	Right-handed alpha
Helix 27	AC9	E	58	81	Right-handed alpha
Helix 28	AD1	E	137	150	Right-handed alpha
Helix 29	AD2	F	24	38	Right-handed alpha
Helix 30	AD3	F	58	62	Right-handed 310
Helix 31	AD4	F	67	72	Right-handed alpha
Helix 32	AD5	F	88	94	Right-handed alpha
Helix 33	AD6	F	96	107	Right-handed alpha
Helix 34	AD7	F	112	119	Right-handed alpha
Helix 35	AD8	F	132	136	Right-handed 310
Helix 36	AD9	G	105	107	Right-handed 310
Helix 37	AE1	G	111	118	Right-handed alpha
Helix 38	AE2	H	58	63	Right-handed alpha
Helix 39	AE3	H	71	74	Right-handed 310
Helix 40	AE4	H	82	87	Right-handed 310
Helix 41	AE5	H	93	100	Right-handed alpha
Helix 42	AE6	H	130	140	Right-handed alpha
Helix 43	AE7	I	44	58	Right-handed alpha
Helix 44	AE8	I	110	122	Right-handed alpha
Helix 45	AE9	I	123	125	Right-handed 310
Helix 46	AF1	J	13	32	Right-handed alpha
Helix 47	AF2	J	38	55	Right-handed alpha
Helix 48	AF3	J	59	71	Right-handed alpha
Helix 49	AF4	J	72	82	Right-handed alpha
Helix 50	AF5	J	82	87	Right-handed alpha
Helix 51	AF6	K	4	12	Right-handed alpha
Helix 52	AF7	K	12	23	Right-handed alpha
Helix 53	AF8	K	66	82	Right-handed alpha
Helix 54	AF9	K	100	112	Right-handed alpha
Helix 55	AG1	L	5	14	Right-handed alpha
Helix 56	AG2	L	56	59	Right-handed 310
Helix 57	AG3	L	100	106	Right-handed 310
Helix 58	AG4	L	107	112	Right-handed 310
Helix 59	AG5	M	7	20	Right-handed alpha
Helix 60	AG6	M	25	30	Right-handed 310
Helix 61	AG7	M	31	72	Right-handed alpha
Helix 62	AG8	M	75	86	Right-handed alpha
Helix 63	AG9	M	91	102	Right-handed alpha
Helix 64	AH1	M	102	118	Right-handed alpha
Helix 65	AH2	O	14	26	Right-handed alpha
Helix 66	AH3	O	29	39	Right-handed alpha
Helix 67	AH4	O	43	62	Right-handed alpha
Helix 68	AH5	O	90	92	Right-handed 310
Helix 69	AH6	P	2	9	Right-handed alpha
Helix 70	AH7	P	16	27	Right-handed alpha
Helix 71	AH8	P	38	51	Right-handed alpha
Helix 72	AH9	R	18	26	Right-handed alpha
Helix 73	AI1	R	48	55	Right-handed alpha
Helix 74	AI2	R	56	62	Right-handed 310
Helix 75	AI3	T	41	44	Right-handed 310
Helix 76	AI4	T	53	63	Right-handed alpha
Helix 77	AI5	T	63	74	Right-handed alpha
Helix 78	AI6	U	12	34	Right-handed alpha
Helix 79	AI7	U	41	61	Right-handed alpha
Helix 80	AI8	V	16	25	Right-handed alpha
Helix 81	AI9	V	40	50	Right-handed alpha
Helix 82	AJ1	X	9	17	Right-handed alpha
Helix 83	AJ2	X	18	20	Right-handed 310
Helix 84	AJ3	Z	8	17	Right-handed alpha
Helix 85	AJ4	Z	17	23	Right-handed alpha
Helix 86	AJ5	Z	24	38	Right-handed alpha
Helix 87	AJ6	a	7	12	Right-handed alpha
Helix 88	AJ7	a	36	43	Right-handed alpha
Helix 89	AJ8	a	53	61	Right-handed alpha
Helix 90	AJ9	b	30	33	Right-handed 310

There are 47 sheets in PDB entry 6YHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	17	19	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	76	82	anti-parallel
Strand 4	A	115	116	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	189	192	anti-parallel
Strand 3	A	140	142	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	171	175	anti-parallel
Strand 6	A	181	185	anti-parallel
Strand 7	A	267	269	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	152	154	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	16	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	189	193	anti-parallel
Strand 4	B	172	184	anti-parallel
Strand 5	B	109	115	anti-parallel
Strand 6	B	203	208	anti-parallel
Strand 7	B	5	16	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	48	53	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	184	188	parallel
Strand 3	C	145	149	parallel
Strand 4	C	166	170	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	155	158	anti-parallel
Strand 3	D	127	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	23	27	anti-parallel
Strand 3	E	35	36	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	52	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	131	135	anti-parallel
Strand 3	E	83	90	anti-parallel
Strand 4	E	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	99	first strand
Strand 2	E	102	106	anti-parallel
Strand 3	E	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	124	first strand
Strand 2	F	53	57	parallel
Strand 3	F	15	19	parallel
Strand 4	F	138	139	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	84	87	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	10	first strand
Strand 2	G	16	24	anti-parallel
Strand 3	G	38	46	anti-parallel
Strand 4	G	57	64	anti-parallel
Strand 5	G	83	86	anti-parallel
Strand 6	G	7	10	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	70	first strand
Strand 2	G	76	79	anti-parallel
Strand 3	L	71	78	anti-parallel
Strand 4	L	61	68	anti-parallel
Strand 5	L	41	54	anti-parallel
Strand 6	L	28	36	anti-parallel
Strand 7	L	84	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	103	first strand
Strand 2	G	120	122	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	80	first strand
Strand 2	H	109	113	parallel
Strand 3	H	128	129	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	92	first strand
Strand 2	H	123	124	parallel
Strand 3	H	143	144	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	66	first strand
Strand 2	I	102	107	anti-parallel
Strand 3	I	32	36	anti-parallel
Strand 4	I	129	133	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	43	first strand
Strand 2	I	89	97	anti-parallel
Strand 3	I	72	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	37	first strand
Strand 2	J	109	115	anti-parallel
Strand 3	J	95	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	53	first strand
Strand 2	K	36	41	anti-parallel
Strand 3	K	26	31	anti-parallel
Strand 4	K	90	92	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	3	7	anti-parallel
Strand 3	N	38	42	anti-parallel
Strand 4	N	47	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	23	first strand
Strand 2	N	92	101	anti-parallel
Strand 3	N	59	68	anti-parallel
Strand 4	N	32	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	72	78	first strand
Strand 2	N	83	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	11	first strand
Strand 2	O	102	109	anti-parallel
Strand 3	O	71	79	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	88	first strand
Strand 2	O	94	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	28	33	anti-parallel
Strand 3	P	79	86	anti-parallel
Strand 4	P	54	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	66	68	first strand
Strand 2	P	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	63	64	first strand
Strand 2	Q	31	34	anti-parallel
Strand 3	Q	21	27	anti-parallel
Strand 4	Q	9	12	anti-parallel
Strand 5	Q	68	71	anti-parallel
Strand 6	Q	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	39	44	first strand
Strand 2	Q	55	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	81	86	first strand
Strand 2	Q	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	7	first strand
Strand 2	R	65	68	parallel
Strand 3	R	73	83	anti-parallel
Strand 4	R	90	97	anti-parallel
Strand 5	R	29	35	parallel
Strand 6	R	42	47	anti-parallel
Strand 7	R	9	10	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	22	23	first strand
Strand 2	S	36	39	anti-parallel
Strand 3	S	59	61	anti-parallel
Strand 4	S	51	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	30	31	first strand
Strand 2	S	65	72	anti-parallel
Strand 3	S	77	83	anti-parallel
Strand 4	S	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	13	18	first strand
Strand 2	T	24	29	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	33	40	first strand
Strand 2	T	45	52	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	34	38	first strand
Strand 2	V	3	8	anti-parallel
Strand 3	V	54	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	27	29	first strand
Strand 2	X	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	16	22	first strand
Strand 2	Y	2	9	anti-parallel
Strand 3	Y	41	49	anti-parallel
Strand 4	Y	31	36	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	15	16	first strand
Strand 2	a	21	24	anti-parallel
Strand 3	a	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	2	4	first strand
Strand 2	b	35	37	parallel
Strand 3	b	22	27	anti-parallel
Strand 4	b	14	19	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHS