Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YHV entry

There are 2 chains in PDB entry 6YHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ALA 567
B
 ILE 2ALA 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6YHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
22 38Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
110 119Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
163 172Right-handed alpha
Helix 8
AA8
A
187 194Right-handed alpha
Helix 9
AA9
A
227 239Right-handed alpha
Helix 10
AB1
A
248 253Right-handed alpha
Helix 11
AB2
A
260 265Right-handed alpha
Helix 12
AB3
A
269 273Right-handed 310
Helix 13
AB4
A
275 280Right-handed 310
Helix 14
AB5
A
289 291Right-handed 310
Helix 15
AB6
A
316 333Right-handed alpha
Helix 16
AB7
A
342 350Right-handed alpha
Helix 17
AB8
A
365 374Right-handed alpha
Helix 18
AB9
A
374 389Right-handed alpha
Helix 19
AC1
A
395 399Right-handed 310
Helix 20
AC2
A
400 404Right-handed 310
Helix 21
AC3
A
418 433Right-handed alpha
Helix 22
AC4
A
436 440Right-handed 310
Helix 23
AC5
A
442 458Right-handed alpha
Helix 24
AC6
A
458 466Right-handed alpha
Helix 25
AC7
A
486 494Right-handed alpha
Helix 26
AC8
A
505 510Right-handed alpha
Helix 27
AC9
A
539 553Right-handed alpha
Helix 28
AD1
B
8 18Right-handed alpha
Helix 29
AD2
B
22 38Right-handed alpha
Helix 30
AD3
B
55 69Right-handed alpha
Helix 31
AD4
B
98 102Right-handed 310
Helix 32
AD5
B
110 119Right-handed alpha
Helix 33
AD6
B
130 134Right-handed 310
Helix 34
AD7
B
163 172Right-handed alpha
Helix 35
AD8
B
187 194Right-handed alpha
Helix 36
AD9
B
227 239Right-handed alpha
Helix 37
AE1
B
248 253Right-handed alpha
Helix 38
AE2
B
260 265Right-handed alpha
Helix 39
AE3
B
269 273Right-handed 310
Helix 40
AE4
B
275 280Right-handed 310
Helix 41
AE5
B
289 291Right-handed 310
Helix 42
AE6
B
316 333Right-handed alpha
Helix 43
AE7
B
342 350Right-handed alpha
Helix 44
AE8
B
365 374Right-handed alpha
Helix 45
AE9
B
374 389Right-handed alpha
Helix 46
AF1
B
395 399Right-handed 310
Helix 47
AF2
B
400 404Right-handed 310
Helix 48
AF3
B
418 433Right-handed alpha
Helix 49
AF4
B
436 440Right-handed 310
Helix 50
AF5
B
442 458Right-handed alpha
Helix 51
AF6
B
458 466Right-handed alpha
Helix 52
AF7
B
486 494Right-handed alpha
Helix 53
AF8
B
505 510Right-handed alpha
Helix 54
AF9
B
539 553Right-handed alpha
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There are 2 sheets in PDB entry 6YHV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
80 84parallel
Strand 4
A
177 182parallel
Strand 5
A
220 225anti-parallel
Strand 6
A
197 200anti-parallel
Strand 7
A
514 521anti-parallel
Strand 8
A
528 534anti-parallel
Strand 9
A
469 473anti-parallel
Strand 10
A
283 287parallel
Strand 11
A
336 340parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
80 84parallel
Strand 4
B
177 182parallel
Strand 5
B
220 225anti-parallel
Strand 6
B
197 200anti-parallel
Strand 7
B
514 521anti-parallel
Strand 8
B
528 534anti-parallel
Strand 9
B
469 473anti-parallel
Strand 10
B
283 287parallel
Strand 11
B
336 340parallel
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