Analysis of interatomic Contacts of Structural Units in PDB entry:
6YI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YI5 entry

There are 6 chains in PDB entry 6YI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	THR 427
B	ILE 4	ILE 165
E	GLU 1	THR 427
F	ILE 4	ILE 165
C	GLU 1	THR 427
D	ILE 4	ILE 165

There are 42 helices in PDB entry 6YI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	70	Right-handed alpha
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	87	94	Right-handed alpha
Helix 4	AA4	A	115	123	Right-handed 310
Helix 5	AA5	A	131	147	Right-handed alpha
Helix 6	AA6	A	229	237	Right-handed alpha
Helix 7	AA7	A	326	334	Right-handed alpha
Helix 8	AA8	A	358	365	Right-handed alpha
Helix 9	AA9	A	366	368	Right-handed 310
Helix 10	AB1	A	404	408	Right-handed 310
Helix 11	AB2	B	41	65	Right-handed alpha
Helix 12	AB3	B	81	126	Right-handed alpha
Helix 13	AB4	B	127	130	Right-handed 310
Helix 14	AB5	B	146	156	Right-handed alpha
Helix 15	AB6	E	65	70	Right-handed alpha
Helix 16	AB7	E	73	78	Right-handed alpha
Helix 17	AB8	E	87	94	Right-handed alpha
Helix 18	AB9	E	115	123	Right-handed 310
Helix 19	AC1	E	131	147	Right-handed alpha
Helix 20	AC2	E	229	237	Right-handed alpha
Helix 21	AC3	E	326	334	Right-handed alpha
Helix 22	AC4	E	358	365	Right-handed alpha
Helix 23	AC5	E	366	369	Right-handed 310
Helix 24	AC6	E	404	408	Right-handed 310
Helix 25	AC7	F	41	65	Right-handed alpha
Helix 26	AC8	F	81	126	Right-handed alpha
Helix 27	AC9	F	127	130	Right-handed 310
Helix 28	AD1	F	146	156	Right-handed alpha
Helix 29	AD2	C	65	70	Right-handed alpha
Helix 30	AD3	C	73	78	Right-handed alpha
Helix 31	AD4	C	87	94	Right-handed alpha
Helix 32	AD5	C	115	123	Right-handed 310
Helix 33	AD6	C	131	147	Right-handed alpha
Helix 34	AD7	C	229	237	Right-handed alpha
Helix 35	AD8	C	326	334	Right-handed alpha
Helix 36	AD9	C	357	365	Right-handed alpha
Helix 37	AE1	C	366	368	Right-handed 310
Helix 38	AE2	C	404	408	Right-handed 310
Helix 39	AE3	D	41	67	Right-handed alpha
Helix 40	AE4	D	81	126	Right-handed alpha
Helix 41	AE5	D	127	130	Right-handed 310
Helix 42	AE6	D	146	156	Right-handed alpha

There are 34 sheets in PDB entry 6YI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	B	14	16	parallel
Strand 3	A	2	11	parallel
Strand 4	B	23	30	anti-parallel
Strand 5	B	37	40	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	B	14	16	parallel
Strand 3	A	2	11	parallel
Strand 4	B	137	141	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	25	32	anti-parallel
Strand 3	A	410	418	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	370	371	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	51	54	parallel
Strand 3	A	109	112	parallel
Strand 4	A	311	314	parallel
Strand 5	A	338	341	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	151	155	anti-parallel
Strand 3	A	300	303	anti-parallel
Strand 4	A	217	226	anti-parallel
Strand 5	A	272	280	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	283	289	anti-parallel
Strand 4	A	242	246	anti-parallel
Strand 5	A	252	257	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	294	297	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	213	214	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	355	357	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	373	375	anti-parallel
Strand 3	A	395	397	anti-parallel
Strand 4	B	73	75	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	401	402	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	426	first strand
Strand 2	F	14	16	parallel
Strand 3	E	2	11	parallel
Strand 4	F	23	30	anti-parallel
Strand 5	F	37	40	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	426	first strand
Strand 2	F	14	16	parallel
Strand 3	E	2	11	parallel
Strand 4	F	137	141	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	25	32	anti-parallel
Strand 3	E	410	418	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	51	54	parallel
Strand 3	E	109	112	parallel
Strand 4	E	311	314	parallel
Strand 5	E	338	341	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	151	155	anti-parallel
Strand 3	E	300	303	anti-parallel
Strand 4	E	217	226	anti-parallel
Strand 5	E	272	280	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	161	first strand
Strand 2	E	200	206	anti-parallel
Strand 3	E	283	289	anti-parallel
Strand 4	E	242	246	anti-parallel
Strand 5	E	252	257	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	182	186	anti-parallel
Strand 3	E	294	297	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	213	214	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	352	first strand
Strand 2	E	355	357	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	380	first strand
Strand 2	E	373	375	anti-parallel
Strand 3	E	395	397	anti-parallel
Strand 4	F	73	75	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	387	first strand
Strand 2	E	401	402	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	D	14	16	parallel
Strand 3	C	2	11	parallel
Strand 4	D	23	30	anti-parallel
Strand 5	D	37	40	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	D	14	16	parallel
Strand 3	C	2	11	parallel
Strand 4	D	137	141	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	25	32	anti-parallel
Strand 3	C	410	418	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	370	371	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	51	54	parallel
Strand 3	C	109	112	parallel
Strand 4	C	311	314	parallel
Strand 5	C	338	341	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	300	303	anti-parallel
Strand 4	C	217	226	anti-parallel
Strand 5	C	272	280	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	200	206	anti-parallel
Strand 3	C	283	289	anti-parallel
Strand 4	C	242	246	anti-parallel
Strand 5	C	252	257	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	294	297	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	213	214	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	373	375	anti-parallel
Strand 3	C	395	398	anti-parallel
Strand 4	D	72	75	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	401	402	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YI5