Analysis of interatomic Contacts of Structural Units in PDB entry:
6YII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YII entry

There is 1 chain in PDB entry 6YII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6YII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
57 63Right-handed alpha
Helix 3
AA3
A
69 95Right-handed alpha
Helix 4
AA4
A
119 140Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
170 174Right-handed 310
Helix 7
AA7
A
180 192Right-handed alpha
Helix 8
AA8
A
201 208Right-handed alpha
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
222 234Right-handed alpha
Helix 11
AB2
A
238 253Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
271 275Right-handed 310
Helix 14
AB5
A
276 279Right-handed 310
Helix 15
AB6
A
294 302Right-handed alpha
Helix 16
AB7
A
306 327Right-handed alpha
Helix 17
AB8
A
354 383Right-handed alpha
Helix 18
AB9
A
418 430Right-handed alpha
Helix 19
AC1
A
439 446Right-handed alpha
Helix 20
AC2
A
447 455Right-handed alpha
Helix 21
AC3
A
464 472Right-handed alpha
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There are 4 sheets in PDB entry 6YII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
42 55parallel
Strand 3
A
154 167anti-parallel
Strand 4
A
176 179anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
42 55anti-parallel
Strand 4
A
154 167anti-parallel
Strand 5
A
197 200parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
280 293parallel
Strand 3
A
391 406anti-parallel
Strand 4
A
413 417anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 337first strand
Strand 2
A
340 345anti-parallel
Strand 3
A
280 293anti-parallel
Strand 4
A
391 406anti-parallel
Strand 5
A
435 438parallel
Strand 6
A
459 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il