Analysis of interatomic Contacts of Structural Units in PDB entry:
6YIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YIJ entry

There are 7 chains in PDB entry 6YIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1079GLY 1197
B
 SER 1079GLY 1197
C
 MET 1080GLY 1197
D
 ILE 1084LEU 1196
E
 ILE 1084GLY 1197
F
 SER 1079LEU 1196
G
 PHE 1085LEU 1196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6YIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1086 1103Right-handed alpha
Helix 2
AA2
A
1108 1112Right-handed 310
Helix 3
AA3
A
1124 1129Right-handed alpha
Helix 4
AA4
A
1134 1144Right-handed alpha
Helix 5
AA5
A
1149 1168Right-handed alpha
Helix 6
AA6
A
1172 1195Right-handed alpha
Helix 7
AA7
B
1086 1103Right-handed alpha
Helix 8
AA8
B
1108 1112Right-handed 310
Helix 9
AA9
B
1124 1129Right-handed alpha
Helix 10
AB1
B
1134 1144Right-handed alpha
Helix 11
AB2
B
1149 1168Right-handed alpha
Helix 12
AB3
B
1172 1195Right-handed alpha
Helix 13
AB4
C
1086 1103Right-handed alpha
Helix 14
AB5
C
1108 1112Right-handed 310
Helix 15
AB6
C
1124 1129Right-handed alpha
Helix 16
AB7
C
1134 1144Right-handed alpha
Helix 17
AB8
C
1149 1168Right-handed alpha
Helix 18
AB9
C
1172 1197Right-handed alpha
Helix 19
AC1
D
1086 1104Right-handed alpha
Helix 20
AC2
D
1108 1112Right-handed 310
Helix 21
AC3
D
1124 1129Right-handed alpha
Helix 22
AC4
D
1134 1144Right-handed alpha
Helix 23
AC5
D
1149 1168Right-handed alpha
Helix 24
AC6
D
1172 1196Right-handed alpha
Helix 25
AC7
E
1086 1104Right-handed alpha
Helix 26
AC8
E
1108 1112Right-handed 310
Helix 27
AC9
E
1116 1121Right-handed alpha
Helix 28
AD1
E
1124 1129Right-handed alpha
Helix 29
AD2
E
1134 1144Right-handed alpha
Helix 30
AD3
E
1149 1168Right-handed alpha
Helix 31
AD4
E
1172 1197Right-handed alpha
Helix 32
AD5
F
1086 1103Right-handed alpha
Helix 33
AD6
F
1108 1112Right-handed 310
Helix 34
AD7
F
1124 1129Right-handed alpha
Helix 35
AD8
F
1134 1144Right-handed alpha
Helix 36
AD9
F
1149 1168Right-handed alpha
Helix 37
AE1
F
1172 1195Right-handed alpha
Helix 38
AE2
G
1086 1104Right-handed alpha
Helix 39
AE3
G
1108 1112Right-handed 310
Helix 40
AE4
G
1124 1129Right-handed alpha
Helix 41
AE5
G
1134 1144Right-handed alpha
Helix 42
AE6
G
1149 1168Right-handed alpha
Helix 43
AE7
G
1172 1196Right-handed alpha
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There are no sheets in PDB entry 6YIJ
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