Analysis of interatomic Contacts of Structural Units in PDB entry:
6YIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YIR entry

There is 1 chain in PDB entry 6YIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6YIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 51Right-handed alpha
Helix 2
2
A
93 104Right-handed alpha
Helix 3
3
A
108 122Right-handed alpha
Helix 4
4
A
137 151Right-handed alpha
Helix 5
5
A
167 184Right-handed alpha
Helix 6
6
A
195 201Right-handed alpha
Helix 7
7
A
219 224Right-handed alpha
Helix 8
8
A
229 234Right-handed alpha
Helix 9
9
A
263 272Right-handed alpha
Helix 10
10
A
73 75Right-handed alpha
Helix 11
11
A
132 134Right-handed alpha
Helix 12
12
A
285 287Right-handed alpha
Helix 13
13
A
350 352Right-handed alpha
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There is 1 sheet ( A) in PDB entry 6YIR.

There are 21 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
20 27first strand
Strand 3
A
32 36first strand
Strand 4
A
60 63first strand
Strand 5
A
66 67first strand
Strand 6
A
78 80first strand
Strand 7
A
155 159first strand
Strand 8
A
188 192first strand
Strand 9
A
204 209first strand
Strand 10
A
212 217first strand
Strand 11
A
241 248first strand
Strand 12
A
251 254first strand
Strand 13
A
257 260first strand
Strand 14
A
277 283first strand
Strand 15
A
288 290first strand
Strand 16
A
302 307first strand
Strand 17
A
309 313first strand
Strand 18
A
316 323first strand
Strand 19
A
326 333first strand
Strand 20
A
342 348first strand
Strand 21
A
354 357first strand
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