Analysis of interatomic Contacts of Structural Units in PDB entry:
6YIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YIZ entry

There are 2 chains in PDB entry 6YIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 91ASP 301
B
 ARG 93PHE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6YIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 94Right-handed 310
Helix 2
AA2
A
104 119Right-handed alpha
Helix 3
AA3
A
128 130Right-handed 310
Helix 4
AA4
A
131 138Right-handed alpha
Helix 5
AA5
A
139 142Right-handed 310
Helix 6
AA6
A
176 181Right-handed alpha
Helix 7
AA7
A
185 191Right-handed alpha
Helix 8
AA8
A
220 231Right-handed alpha
Helix 9
AA9
A
239 248Right-handed alpha
Helix 10
AB1
A
273 278Right-handed alpha
Helix 11
AB2
A
278 298Right-handed alpha
Helix 12
AB3
A
299 301Right-handed 310
Helix 13
AB4
B
104 116Right-handed alpha
Helix 14
AB5
B
131 138Right-handed alpha
Helix 15
AB6
B
139 142Right-handed 310
Helix 16
AB7
B
176 181Right-handed alpha
Helix 17
AB8
B
185 190Right-handed alpha
Helix 18
AB9
B
220 231Right-handed alpha
Helix 19
AC1
B
242 249Right-handed alpha
Helix 20
AC2
B
274 276Right-handed 310
Helix 21
AC3
B
278 298Right-handed alpha
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There are 5 sheets in PDB entry 6YIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 272anti-parallel
Strand 5
A
158 172anti-parallel
Strand 6
A
234 238anti-parallel
Strand 7
A
194 197parallel
Strand 8
A
215 218parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 272anti-parallel
Strand 5
A
158 172anti-parallel
Strand 6
A
252 253anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
95 100parallel
Strand 3
B
145 148parallel
Strand 4
B
263 272anti-parallel
Strand 5
B
162 172anti-parallel
Strand 6
B
234 238anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
263 272anti-parallel
Strand 3
B
162 172anti-parallel
Strand 4
B
252 253anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
215 218parallel
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