Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJ5 entry

There is 1 chain in PDB entry 6YJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
q
 SER 2GLU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6YJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
q
6 15Right-handed alpha
Helix 2
AA2
q
38 43Right-handed alpha
Helix 3
AA3
q
54 59Right-handed alpha
Helix 4
AA4
q
74 79Right-handed alpha
Helix 5
AA5
q
100 110Right-handed alpha
Helix 6
AA6
q
120 126Right-handed alpha
Helix 7
AA7
q
169 175Right-handed alpha
Helix 8
AA8
q
176 179Right-handed 310
Helix 9
AA9
q
181 185Right-handed 310
Helix 10
AB1
q
186 191Right-handed alpha
Helix 11
AB2
q
237 247Right-handed alpha
Helix 12
AB3
q
260 264Right-handed 310
Helix 13
AB4
q
265 266Right-handed 310
Helix 14
AB5
q
267 277Right-handed alpha
Helix 15
AB6
q
290 297Right-handed alpha
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There are 2 sheets in PDB entry 6YJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
q
3 5first strand
Strand 2
q
115 118parallel
Strand 3
q
89 92parallel
Strand 4
q
20 23parallel
Strand 5
q
51 52parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
q
192 193first strand
Strand 2
q
256 258parallel
Strand 3
q
285 286parallel
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