Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJ6 entry

There are 3 chains in PDB entry 6YJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 130ILE 1025
B
 ILE 25UNK 1027
C
 VAL 3VAL 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 6YJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 140Right-handed alpha
Helix 2
AA2
A
147 158Right-handed alpha
Helix 3
AA3
A
161 176Right-handed alpha
Helix 4
AA4
A
177 190Right-handed alpha
Helix 5
AA5
A
195 209Right-handed alpha
Helix 6
AA6
A
211 226Right-handed alpha
Helix 7
AA7
A
231 244Right-handed alpha
Helix 8
AA8
A
245 259Right-handed alpha
Helix 9
AA9
A
263 277Right-handed alpha
Helix 10
AB1
A
279 304Right-handed alpha
Helix 11
AB2
A
342 348Right-handed alpha
Helix 12
AB3
A
356 371Right-handed alpha
Helix 13
AB4
A
373 388Right-handed alpha
Helix 14
AB5
A
394 399Right-handed 310
Helix 15
AB6
A
407 413Right-handed 310
Helix 16
AB7
A
415 419Right-handed 310
Helix 17
AB8
A
431 445Right-handed alpha
Helix 18
AB9
A
447 456Right-handed alpha
Helix 19
AC1
A
457 460Right-handed 310
Helix 20
AC2
A
466 480Right-handed alpha
Helix 21
AC3
A
482 491Right-handed alpha
Helix 22
AC4
A
492 496Right-handed 310
Helix 23
AC5
A
501 515Right-handed alpha
Helix 24
AC6
A
517 529Right-handed alpha
Helix 25
AC7
A
536 549Right-handed alpha
Helix 26
AC8
A
551 571Right-handed alpha
Helix 27
AC9
A
613 637Right-handed alpha
Helix 28
AD1
A
647 665Right-handed alpha
Helix 29
AD2
A
666 668Right-handed 310
Helix 30
AD3
A
676 684Right-handed alpha
Helix 31
AD4
A
685 687Right-handed 310
Helix 32
AD5
A
691 701Right-handed alpha
Helix 33
AD6
A
735 749Right-handed alpha
Helix 34
AD7
A
751 763Right-handed alpha
Helix 35
AD8
A
774 787Right-handed alpha
Helix 36
AD9
A
791 806Right-handed alpha
Helix 37
AE1
A
809 820Right-handed alpha
Helix 38
AE2
A
823 831Right-handed alpha
Helix 39
AE3
A
832 852Right-handed alpha
Helix 40
AE4
A
876 887Right-handed alpha
Helix 41
AE5
A
890 903Right-handed alpha
Helix 42
AE6
A
908 924Right-handed alpha
Helix 43
AE7
A
929 953Right-handed alpha
Helix 44
AE8
A
956 972Right-handed alpha
Helix 45
AE9
A
974 988Right-handed alpha
Helix 46
AF1
A
994 1009Right-handed alpha
Helix 47
AF2
A
1011 1022Right-handed alpha
Helix 48
AF3
B
48 59Right-handed alpha
Helix 49
AF4
B
61 70Right-handed alpha
Helix 50
AF5
B
126 130Right-handed 310
Helix 51
AF6
B
132 140Right-handed alpha
Helix 52
AF7
B
173 181Right-handed alpha
Helix 53
AF8
B
187 196Right-handed alpha
Helix 54
AF9
B
208 212Right-handed 310
Helix 55
AG1
B
286 299Right-handed alpha
Helix 56
AG2
B
306 309Right-handed 310
Helix 57
AG3
B
310 329Right-handed alpha
Helix 58
AG4
B
333 338Right-handed alpha
Helix 59
AG5
B
348 353Right-handed alpha
Helix 60
AG6
B
375 383Right-handed 310
Helix 61
AG7
B
401 406Right-handed alpha
Helix 62
AG8
B
441 445Right-handed alpha
Helix 63
AG9
B
447 455Right-handed alpha
Helix 64
AH1
B
471 491Right-handed alpha
Helix 65
AH2
B
497 506Right-handed alpha
Helix 66
AH3
B
573 585Right-handed alpha
Helix 67
AH4
B
1008 1015Right-handed alpha
Helix 68
AH5
B
1018 1026Right-handed alpha
Helix 69
AH6
C
37 52Right-handed alpha
Helix 70
AH7
C
66 81Right-handed alpha
Helix 71
AH8
C
88 91Right-handed 310
Helix 72
AH9
C
107 115Right-handed alpha
Helix 73
AI1
C
135 158Right-handed alpha
Helix 74
AI2
C
169 182Right-handed alpha
Helix 75
AI3
C
230 234Right-handed 310
Helix 76
AI4
C
256 260Right-handed 310
Helix 77
AI5
C
351 354Right-handed 310
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There are 7 sheets in PDB entry 6YJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
C
316 320anti-parallel
Strand 3
C
328 331anti-parallel
Strand 4
C
334 340anti-parallel
Strand 5
C
421 431anti-parallel
Strand 6
C
292 299parallel
Strand 7
B
114 121anti-parallel
Strand 8
B
147 159anti-parallel
Strand 9
B
103 107anti-parallel
Strand 10
B
81 83anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
C
316 320anti-parallel
Strand 3
C
328 331anti-parallel
Strand 4
C
334 340anti-parallel
Strand 5
C
421 431anti-parallel
Strand 6
C
346 349anti-parallel
Strand 7
B
35 41anti-parallel
Strand 8
B
147 159parallel
Strand 9
B
103 107anti-parallel
Strand 10
B
81 83anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 266first strand
Strand 2
B
587 589anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
357 360parallel
Strand 3
B
369 371anti-parallel
Strand 4
B
331 332anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
439 440anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
568 569anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
61 63parallel
Strand 3
C
163 168parallel
Strand 4
C
5 10parallel
Strand 5
C
204 209anti-parallel
Strand 6
C
236 238anti-parallel
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