Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJ7 entry

There are 2 chains in PDB entry 6YJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 144
B
 GLU 11SER 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6YJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed 310
Helix 2
AA2
A
13 18Right-handed alpha
Helix 3
AA3
A
22 24Right-handed 310
Helix 4
AA4
A
32 44Right-handed alpha
Helix 5
AA5
A
63 71Right-handed alpha
Helix 6
AA6
A
79 84Right-handed alpha
Helix 7
AA7
A
85 89Right-handed 310
Helix 8
AA8
A
102 110Right-handed alpha
Helix 9
AA9
A
121 123Right-handed 310
Helix 10
AB1
A
131 144Right-handed alpha
Helix 11
AB2
B
13 18Right-handed alpha
Helix 12
AB3
B
22 24Right-handed 310
Helix 13
AB4
B
32 44Right-handed alpha
Helix 14
AB5
B
63 70Right-handed alpha
Helix 15
AB6
B
77 84Right-handed 310
Helix 16
AB7
B
85 89Right-handed 310
Helix 17
AB8
B
102 111Right-handed alpha
Helix 18
AB9
B
131 144Right-handed alpha
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There are 4 sheets in PDB entry 6YJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
125 130anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
96 98parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
47 51parallel
Strand 3
A
57 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
125 130anti-parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
96 98parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
47 51parallel
Strand 3
B
57 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il