Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJB entry

There are 3 chains in PDB entry 6YJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 309
B
 C 1 A 2
B
 A 4 G 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6YJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
33 38Right-handed alpha
Helix 3
AA3
A
39 42Right-handed 310
Helix 4
AA4
A
72 80Right-handed 310
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
111 113Right-handed 310
Helix 8
AA8
A
135 147Right-handed alpha
Helix 9
AA9
A
147 155Right-handed alpha
Helix 10
AB1
A
157 159Right-handed 310
Helix 11
AB2
A
160 176Right-handed alpha
Helix 12
AB3
A
181 193Right-handed alpha
Helix 13
AB4
A
196 204Right-handed alpha
Helix 14
AB5
A
216 220Right-handed 310
Helix 15
AB6
A
232 237Right-handed alpha
Helix 16
AB7
A
246 255Right-handed alpha
Helix 17
AB8
A
273 280Right-handed alpha
Helix 18
AB9
A
291 305Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6YJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
55 62anti-parallel
Strand 4
A
47 52anti-parallel
Strand 5
A
3 7parallel
Strand 6
A
131 134anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
266 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il