Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJI entry

There are 2 chains in PDB entry 6YJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23PRO 499
B
 ASN 25THR 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6YJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
136 149Right-handed alpha
Helix 5
AA5
A
161 167Right-handed alpha
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
A
204 214Right-handed alpha
Helix 8
AA8
A
215 217Right-handed 310
Helix 9
AA9
A
246 263Right-handed alpha
Helix 10
AB1
A
290 292Right-handed 310
Helix 11
AB2
A
293 307Right-handed alpha
Helix 12
AB3
A
321 330Right-handed alpha
Helix 13
AB4
A
331 335Right-handed 310
Helix 14
AB5
A
360 371Right-handed alpha
Helix 15
AB6
A
390 396Right-handed 310
Helix 16
AB7
A
397 401Right-handed 310
Helix 17
AB8
A
425 444Right-handed alpha
Helix 18
AB9
A
451 455Right-handed 310
Helix 19
AC1
A
460 470Right-handed alpha
Helix 20
AC2
A
472 484Right-handed alpha
Helix 21
AC3
B
26 37Right-handed alpha
Helix 22
AC4
B
48 53Right-handed alpha
Helix 23
AC5
B
72 86Right-handed alpha
Helix 24
AC6
B
136 149Right-handed alpha
Helix 25
AC7
B
161 167Right-handed alpha
Helix 26
AC8
B
174 179Right-handed alpha
Helix 27
AC9
B
180 184Right-handed alpha
Helix 28
AD1
B
204 214Right-handed alpha
Helix 29
AD2
B
215 217Right-handed 310
Helix 30
AD3
B
246 262Right-handed alpha
Helix 31
AD4
B
290 292Right-handed 310
Helix 32
AD5
B
293 309Right-handed alpha
Helix 33
AD6
B
321 330Right-handed alpha
Helix 34
AD7
B
331 339Right-handed 310
Helix 35
AD8
B
360 371Right-handed alpha
Helix 36
AD9
B
390 396Right-handed 310
Helix 37
AE1
B
397 401Right-handed 310
Helix 38
AE2
B
425 444Right-handed alpha
Helix 39
AE3
B
451 455Right-handed 310
Helix 40
AE4
B
460 470Right-handed alpha
Helix 41
AE5
B
472 484Right-handed alpha
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There are 6 sheets in PDB entry 6YJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
66 68anti-parallel
Strand 3
A
110 113parallel
Strand 4
A
90 93parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
185 191anti-parallel
Strand 5
A
197 201anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 320first strand
Strand 2
A
234 243anti-parallel
Strand 3
A
281 287anti-parallel
Strand 4
A
270 275anti-parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
408 418anti-parallel
Strand 7
A
349 354anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
66 68anti-parallel
Strand 3
B
110 113parallel
Strand 4
B
90 93parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
129 132anti-parallel
Strand 3
B
219 225anti-parallel
Strand 4
B
185 191anti-parallel
Strand 5
B
197 201anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 320first strand
Strand 2
B
234 243anti-parallel
Strand 3
B
281 287anti-parallel
Strand 4
B
270 275anti-parallel
Strand 5
B
380 388anti-parallel
Strand 6
B
408 418anti-parallel
Strand 7
B
349 354anti-parallel
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