Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJM entry

There are 2 chains in PDB entry 6YJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 264PRO 483
B
 ARG 265ILE 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6YJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
276 284Right-handed alpha
Helix 2
AA2
A
286 303Right-handed alpha
Helix 3
AA3
A
304 308Right-handed 310
Helix 4
AA4
A
333 349Right-handed alpha
Helix 5
AA5
A
403 416Right-handed alpha
Helix 6
AA6
A
423 431Right-handed alpha
Helix 7
AA7
A
453 466Right-handed alpha
Helix 8
AA8
A
469 473Right-handed 310
Helix 9
AA9
B
276 284Right-handed alpha
Helix 10
AB1
B
286 303Right-handed alpha
Helix 11
AB2
B
304 308Right-handed 310
Helix 12
AB3
B
333 348Right-handed alpha
Helix 13
AB4
B
389 392Right-handed 310
Helix 14
AB5
B
403 416Right-handed alpha
Helix 15
AB6
B
423 431Right-handed alpha
Helix 16
AB7
B
453 466Right-handed alpha
Helix 17
AB8
B
469 473Right-handed 310
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There are 2 sheets in PDB entry 6YJM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 320first strand
Strand 2
A
267 275parallel
Strand 3
A
361 366parallel
Strand 4
A
394 398parallel
Strand 5
A
380 382anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 320first strand
Strand 2
B
267 275parallel
Strand 3
B
361 366parallel
Strand 4
B
394 398parallel
Strand 5
B
380 382anti-parallel
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