Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJO entry

There is 1 chain in PDB entry 6YJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31ALA 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6YJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
51 58Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
121 123Right-handed 310
Helix 5
AA5
A
141 153Right-handed alpha
Helix 6
AA6
A
166 172Right-handed alpha
Helix 7
AA7
A
179 184Right-handed alpha
Helix 8
AA8
A
185 188Right-handed 310
Helix 9
AA9
A
210 221Right-handed alpha
Helix 10
AB1
A
222 224Right-handed 310
Helix 11
AB2
A
251 269Right-handed alpha
Helix 12
AB3
A
293 309Right-handed alpha
Helix 13
AB4
A
319 327Right-handed alpha
Helix 14
AB5
A
356 372Right-handed alpha
Helix 15
AB6
A
411 415Right-handed 310
Helix 16
AB7
A
430 447Right-handed alpha
Helix 17
AB8
A
457 461Right-handed 310
Helix 18
AB9
A
466 476Right-handed alpha
Helix 19
AC1
A
478 490Right-handed alpha
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There are 4 sheets in PDB entry 6YJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
116 119parallel
Strand 3
A
95 98parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
226 233anti-parallel
Strand 4
A
190 196anti-parallel
Strand 5
A
202 206anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
235 236anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
380 386anti-parallel
Strand 6
A
417 423anti-parallel
Strand 7
A
346 352anti-parallel
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