Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJP entry

There are 5 chains in PDB entry 6YJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 23HIS 247
D
 THR 23GLY 245
A
 GLY 18GLU 128
B
 GLY 18GLU 128
E
 ASP 25GLY 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6YJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
57 59Right-handed 310
Helix 2
AA2
C
96 101Right-handed alpha
Helix 3
AA3
C
113 116Right-handed 310
Helix 4
AA4
D
57 59Right-handed 310
Helix 5
AA5
D
96 101Right-handed alpha
Helix 6
AA6
D
113 117Right-handed 310
Helix 7
AA7
A
61 65Right-handed 310
Helix 8
AA8
A
81 87Right-handed alpha
Helix 9
AA9
B
61 65Right-handed 310
Helix 10
AB1
B
81 87Right-handed alpha
Helix 11
AB2
E
57 59Right-handed 310
Helix 12
AB3
E
96 101Right-handed alpha
Helix 13
AB4
E
113 117Right-handed 310
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There are 23 sheets in PDB entry 6YJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
49 51anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
129 140parallel
Strand 3
C
118 126anti-parallel
Strand 4
C
61 69anti-parallel
Strand 5
C
76 82anti-parallel
Strand 6
C
85 88anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
107 109anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
200 201anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
160 168anti-parallel
Strand 4
C
144 147anti-parallel
Strand 5
E
239 243parallel
Strand 6
E
225 232anti-parallel
Strand 7
E
173 180anti-parallel
Strand 8
E
187 189anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
174 180anti-parallel
Strand 3
C
225 231anti-parallel
Strand 4
C
239 243anti-parallel
Strand 5
E
144 147parallel
Strand 6
E
159 168anti-parallel
Strand 7
E
207 215anti-parallel
Strand 8
E
194 196anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
174 180anti-parallel
Strand 3
C
225 231anti-parallel
Strand 4
C
239 243anti-parallel
Strand 5
E
144 147parallel
Strand 6
E
159 168anti-parallel
Strand 7
E
207 215anti-parallel
Strand 8
E
200 201anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
49 51anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 39first strand
Strand 2
D
129 140parallel
Strand 3
D
118 126anti-parallel
Strand 4
D
61 68anti-parallel
Strand 5
D
76 82anti-parallel
Strand 6
D
85 88anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
107 109anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
161 168anti-parallel
Strand 3
D
207 213anti-parallel
Strand 4
D
194 196anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
161 168anti-parallel
Strand 3
D
207 213anti-parallel
Strand 4
D
200 201anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 189first strand
Strand 2
D
173 180anti-parallel
Strand 3
D
225 232anti-parallel
Strand 4
D
239 243anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
40 41anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
123 128parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
51 57anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
123 128parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
116 119anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
77 78anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
123 128parallel
Strand 3
B
104 112anti-parallel
Strand 4
B
51 57anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
123 128parallel
Strand 3
B
104 112anti-parallel
Strand 4
B
116 119anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
93 95anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 29first strand
Strand 2
E
49 51anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 39first strand
Strand 2
E
129 140parallel
Strand 3
E
118 126anti-parallel
Strand 4
E
61 68anti-parallel
Strand 5
E
76 81anti-parallel
Strand 6
E
86 88anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
107 109anti-parallel
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