Analysis of interatomic Contacts of Structural Units in PDB entry:
6YJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YJW entry

There are 2 chains in PDB entry 6YJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ILE 365
B
 ALA 13ILE 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6YJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
30 42Right-handed alpha
Helix 3
AA3
A
43 51Right-handed alpha
Helix 4
AA4
A
58 64Right-handed alpha
Helix 5
AA5
A
72 87Right-handed alpha
Helix 6
AA6
A
110 115Right-handed 310
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
133 138Right-handed alpha
Helix 9
AA9
A
139 141Right-handed 310
Helix 10
AB1
A
142 150Right-handed alpha
Helix 11
AB2
A
152 159Right-handed alpha
Helix 12
AB3
A
161 167Right-handed alpha
Helix 13
AB4
A
169 192Right-handed alpha
Helix 14
AB5
A
212 222Right-handed alpha
Helix 15
AB6
A
232 237Right-handed alpha
Helix 16
AB7
A
267 271Right-handed 310
Helix 17
AB8
A
272 287Right-handed alpha
Helix 18
AB9
A
307 324Right-handed alpha
Helix 19
AC1
A
331 342Right-handed alpha
Helix 20
AC2
B
15 28Right-handed alpha
Helix 21
AC3
B
30 42Right-handed alpha
Helix 22
AC4
B
43 51Right-handed alpha
Helix 23
AC5
B
58 64Right-handed alpha
Helix 24
AC6
B
72 87Right-handed alpha
Helix 25
AC7
B
110 115Right-handed 310
Helix 26
AC8
B
124 132Right-handed alpha
Helix 27
AC9
B
133 141Right-handed alpha
Helix 28
AD1
B
142 150Right-handed alpha
Helix 29
AD2
B
152 159Right-handed alpha
Helix 30
AD3
B
161 167Right-handed alpha
Helix 31
AD4
B
169 192Right-handed alpha
Helix 32
AD5
B
212 222Right-handed alpha
Helix 33
AD6
B
232 237Right-handed alpha
Helix 34
AD7
B
267 271Right-handed 310
Helix 35
AD8
B
272 287Right-handed alpha
Helix 36
AD9
B
307 324Right-handed alpha
Helix 37
AE1
B
331 342Right-handed alpha
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There are 4 sheets in PDB entry 6YJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
102 108anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
226 231parallel
Strand 3
A
203 207parallel
Strand 4
A
261 265parallel
Strand 5
A
292 297parallel
Strand 6
A
356 362anti-parallel
Strand 7
A
346 353anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 96first strand
Strand 2
B
102 108anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
226 231parallel
Strand 3
B
203 207parallel
Strand 4
B
261 265parallel
Strand 5
B
292 297parallel
Strand 6
B
356 362anti-parallel
Strand 7
B
346 353anti-parallel
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