Analysis of interatomic Contacts of Structural Units in PDB entry:
6YK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YK8 entry

There are 2 chains in PDB entry 6YK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 16PRO 302
B
 CYS 16PRO 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6YK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
68 75Right-handed alpha
Helix 5
AA5
A
75 99Right-handed alpha
Helix 6
AA6
A
100 102Right-handed 310
Helix 7
AA7
A
103 124Right-handed alpha
Helix 8
AA8
A
126 132Right-handed 310
Helix 9
AA9
A
138 143Right-handed alpha
Helix 10
AB1
A
144 148Right-handed 310
Helix 11
AB2
A
151 179Right-handed alpha
Helix 12
AB3
A
190 229Right-handed alpha
Helix 13
AB4
A
235 248Right-handed alpha
Helix 14
AB5
B
17 33Right-handed alpha
Helix 15
AB6
B
34 45Right-handed alpha
Helix 16
AB7
B
48 59Right-handed alpha
Helix 17
AB8
B
68 75Right-handed alpha
Helix 18
AB9
B
75 99Right-handed alpha
Helix 19
AC1
B
100 102Right-handed 310
Helix 20
AC2
B
103 124Right-handed alpha
Helix 21
AC3
B
126 132Right-handed 310
Helix 22
AC4
B
138 143Right-handed alpha
Helix 23
AC5
B
144 149Right-handed alpha
Helix 24
AC6
B
151 179Right-handed alpha
Helix 25
AC7
B
192 229Right-handed alpha
Helix 26
AC8
B
235 247Right-handed alpha
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There are 4 sheets in PDB entry 6YK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
261 262anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
287 292parallel
Strand 3
A
296 299anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
261 262anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 273first strand
Strand 2
B
287 292parallel
Strand 3
B
296 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il