Analysis of interatomic Contacts of Structural Units in PDB entry:
6YK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YK9 entry

There are 4 chains in PDB entry 6YK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 342
B
 THR 2LYS 342
C
 THR 2LYS 342
E
 THR 2PHE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6YK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 21Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
37 43Right-handed 310
Helix 4
AA4
A
44 56Right-handed alpha
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
A
80 90Right-handed alpha
Helix 7
AA7
A
91 94Right-handed 310
Helix 8
AA8
A
95 107Right-handed alpha
Helix 9
AA9
A
122 127Right-handed 310
Helix 10
AB1
A
133 139Right-handed alpha
Helix 11
AB2
A
153 162Right-handed alpha
Helix 12
AB3
A
163 165Right-handed 310
Helix 13
AB4
A
178 189Right-handed alpha
Helix 14
AB5
A
191 193Right-handed 310
Helix 15
AB6
A
220 236Right-handed alpha
Helix 16
AB7
A
243 251Right-handed alpha
Helix 17
AB8
A
253 274Right-handed alpha
Helix 18
AB9
A
278 301Right-handed alpha
Helix 19
AC1
A
302 309Right-handed 310
Helix 20
AC2
A
310 322Right-handed 310
Helix 21
AC3
A
323 328Right-handed 310
Helix 22
AC4
A
329 340Right-handed alpha
Helix 23
AC5
B
14 21Right-handed alpha
Helix 24
AC6
B
25 36Right-handed alpha
Helix 25
AC7
B
37 43Right-handed 310
Helix 26
AC8
B
44 56Right-handed alpha
Helix 27
AC9
B
67 71Right-handed 310
Helix 28
AD1
B
80 90Right-handed alpha
Helix 29
AD2
B
91 94Right-handed 310
Helix 30
AD3
B
95 107Right-handed alpha
Helix 31
AD4
B
122 127Right-handed 310
Helix 32
AD5
B
133 139Right-handed alpha
Helix 33
AD6
B
153 162Right-handed alpha
Helix 34
AD7
B
163 165Right-handed 310
Helix 35
AD8
B
178 189Right-handed alpha
Helix 36
AD9
B
191 193Right-handed 310
Helix 37
AE1
B
220 236Right-handed alpha
Helix 38
AE2
B
245 251Right-handed alpha
Helix 39
AE3
B
253 274Right-handed alpha
Helix 40
AE4
B
278 301Right-handed alpha
Helix 41
AE5
B
302 309Right-handed 310
Helix 42
AE6
B
310 322Right-handed 310
Helix 43
AE7
B
323 328Right-handed 310
Helix 44
AE8
B
329 341Right-handed alpha
Helix 45
AE9
C
14 21Right-handed alpha
Helix 46
AF1
C
25 36Right-handed alpha
Helix 47
AF2
C
37 41Right-handed 310
Helix 48
AF3
C
44 56Right-handed alpha
Helix 49
AF4
C
67 71Right-handed 310
Helix 50
AF5
C
80 91Right-handed alpha
Helix 51
AF6
C
92 94Right-handed 310
Helix 52
AF7
C
95 108Right-handed alpha
Helix 53
AF8
C
122 127Right-handed 310
Helix 54
AF9
C
133 139Right-handed alpha
Helix 55
AG1
C
153 162Right-handed alpha
Helix 56
AG2
C
163 165Right-handed 310
Helix 57
AG3
C
178 189Right-handed alpha
Helix 58
AG4
C
191 193Right-handed 310
Helix 59
AG5
C
220 236Right-handed alpha
Helix 60
AG6
C
245 251Right-handed alpha
Helix 61
AG7
C
253 274Right-handed alpha
Helix 62
AG8
C
278 301Right-handed alpha
Helix 63
AG9
C
302 309Right-handed 310
Helix 64
AH1
C
310 322Right-handed 310
Helix 65
AH2
C
323 328Right-handed 310
Helix 66
AH3
C
329 341Right-handed alpha
Helix 67
AH4
E
14 21Right-handed alpha
Helix 68
AH5
E
25 36Right-handed alpha
Helix 69
AH6
E
37 41Right-handed 310
Helix 70
AH7
E
44 56Right-handed alpha
Helix 71
AH8
E
67 71Right-handed 310
Helix 72
AH9
E
80 90Right-handed alpha
Helix 73
AI1
E
91 94Right-handed 310
Helix 74
AI2
E
95 107Right-handed alpha
Helix 75
AI3
E
122 127Right-handed 310
Helix 76
AI4
E
133 139Right-handed alpha
Helix 77
AI5
E
153 162Right-handed alpha
Helix 78
AI6
E
163 165Right-handed 310
Helix 79
AI7
E
178 189Right-handed alpha
Helix 80
AI8
E
191 193Right-handed 310
Helix 81
AI9
E
220 236Right-handed alpha
Helix 82
AJ1
E
245 251Right-handed alpha
Helix 83
AJ2
E
253 274Right-handed alpha
Helix 84
AJ3
E
278 301Right-handed alpha
Helix 85
AJ4
E
304 309Right-handed alpha
Helix 86
AJ5
E
310 322Right-handed 310
Helix 87
AJ6
E
323 328Right-handed 310
Helix 88
AJ7
E
329 340Right-handed alpha
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There are 12 sheets in PDB entry 6YK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
61 65parallel
Strand 3
A
5 9parallel
Strand 4
A
143 146parallel
Strand 5
A
169 173parallel
Strand 6
A
195 199parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
116 119parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
238 242parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
61 65parallel
Strand 3
B
5 9parallel
Strand 4
B
143 146parallel
Strand 5
B
169 173parallel
Strand 6
B
195 199parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
116 119parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 216first strand
Strand 2
B
238 242parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
61 65parallel
Strand 3
C
5 9parallel
Strand 4
C
143 146parallel
Strand 5
C
169 173parallel
Strand 6
C
195 199parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 75first strand
Strand 2
C
116 119parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 216first strand
Strand 2
C
238 242parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 131first strand
Strand 2
E
61 65parallel
Strand 3
E
5 9parallel
Strand 4
E
143 146parallel
Strand 5
E
169 173parallel
Strand 6
E
195 199parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 75first strand
Strand 2
E
116 119parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 216first strand
Strand 2
E
238 242parallel
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