Analysis of interatomic Contacts of Structural Units in PDB entry:
6YKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YKB entry

There are 2 chains in PDB entry 6YKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 342
C
 THR 2LYS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6YKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
37 41Right-handed 310
Helix 4
AA4
A
44 56Right-handed alpha
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
A
80 90Right-handed alpha
Helix 7
AA7
A
91 94Right-handed 310
Helix 8
AA8
A
95 108Right-handed alpha
Helix 9
AA9
A
122 127Right-handed 310
Helix 10
AB1
A
133 139Right-handed alpha
Helix 11
AB2
A
153 162Right-handed alpha
Helix 12
AB3
A
163 165Right-handed 310
Helix 13
AB4
A
178 189Right-handed alpha
Helix 14
AB5
A
191 195Right-handed 310
Helix 15
AB6
A
220 236Right-handed alpha
Helix 16
AB7
A
245 251Right-handed alpha
Helix 17
AB8
A
253 274Right-handed alpha
Helix 18
AB9
A
278 301Right-handed alpha
Helix 19
AC1
A
304 309Right-handed alpha
Helix 20
AC2
A
310 316Right-handed 310
Helix 21
AC3
A
317 322Right-handed 310
Helix 22
AC4
A
323 328Right-handed 310
Helix 23
AC5
A
329 340Right-handed alpha
Helix 24
AC6
C
14 20Right-handed alpha
Helix 25
AC7
C
25 36Right-handed alpha
Helix 26
AC8
C
37 41Right-handed 310
Helix 27
AC9
C
44 56Right-handed alpha
Helix 28
AD1
C
67 71Right-handed 310
Helix 29
AD2
C
80 89Right-handed alpha
Helix 30
AD3
C
90 94Right-handed 310
Helix 31
AD4
C
95 107Right-handed alpha
Helix 32
AD5
C
122 127Right-handed 310
Helix 33
AD6
C
133 139Right-handed alpha
Helix 34
AD7
C
153 162Right-handed alpha
Helix 35
AD8
C
163 165Right-handed 310
Helix 36
AD9
C
178 189Right-handed alpha
Helix 37
AE1
C
191 195Right-handed 310
Helix 38
AE2
C
220 236Right-handed alpha
Helix 39
AE3
C
245 251Right-handed alpha
Helix 40
AE4
C
253 274Right-handed alpha
Helix 41
AE5
C
278 301Right-handed alpha
Helix 42
AE6
C
304 309Right-handed alpha
Helix 43
AE7
C
310 322Right-handed 310
Helix 44
AE8
C
323 328Right-handed 310
Helix 45
AE9
C
329 340Right-handed alpha
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There are 6 sheets in PDB entry 6YKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
61 65parallel
Strand 3
A
5 9parallel
Strand 4
A
143 146parallel
Strand 5
A
170 173parallel
Strand 6
A
196 199parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
116 119parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
238 242parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
61 65parallel
Strand 3
C
5 9parallel
Strand 4
C
143 146parallel
Strand 5
C
170 173parallel
Strand 6
C
196 199parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 75first strand
Strand 2
C
116 119parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 216first strand
Strand 2
C
238 242parallel
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