Analysis of interatomic Contacts of Structural Units in PDB entry:
6YKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YKK entry

There is 1 chain in PDB entry 6YKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 849

There are 40 helices in PDB entry 6YKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	22	Right-handed alpha
Helix 2	AA2	A	49	69	Right-handed alpha
Helix 3	AA3	A	83	94	Right-handed alpha
Helix 4	AA4	A	96	115	Right-handed alpha
Helix 5	AA5	A	120	124	Right-handed 310
Helix 6	AA6	A	129	146	Right-handed alpha
Helix 7	AA7	A	167	169	Right-handed 310
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	206	209	Right-handed 310
Helix 11	AB2	A	213	225	Right-handed alpha
Helix 12	AB3	A	238	241	Right-handed 310
Helix 13	AB4	A	246	250	Right-handed alpha
Helix 14	AB5	A	258	265	Right-handed 310
Helix 15	AB6	A	274	281	Right-handed alpha
Helix 16	AB7	A	284	297	Right-handed alpha
Helix 17	AB8	A	300	307	Right-handed 310
Helix 18	AB9	A	351	362	Right-handed alpha
Helix 19	AC1	A	382	387	Right-handed 310
Helix 20	AC2	A	396	400	Right-handed 310
Helix 21	AC3	A	403	419	Right-handed alpha
Helix 22	AC4	A	458	462	Right-handed 310
Helix 23	AC5	A	477	481	Right-handed 310
Helix 24	AC6	A	482	486	Right-handed alpha
Helix 25	AC7	A	508	511	Right-handed 310
Helix 26	AC8	A	512	517	Right-handed alpha
Helix 27	AC9	A	528	536	Right-handed alpha
Helix 28	AD1	A	546	548	Right-handed 310
Helix 29	AD2	A	549	565	Right-handed alpha
Helix 30	AD3	A	601	603	Right-handed 310
Helix 31	AD4	A	644	653	Right-handed alpha
Helix 32	AD5	A	653	665	Right-handed alpha
Helix 33	AD6	A	674	698	Right-handed alpha
Helix 34	AD7	A	713	736	Right-handed alpha
Helix 35	AD8	A	739	756	Right-handed alpha
Helix 36	AD9	A	761	780	Right-handed alpha
Helix 37	AE1	A	783	795	Right-handed alpha
Helix 38	AE2	A	798	803	Right-handed alpha
Helix 39	AE3	A	808	813	Right-handed 310
Helix 40	AE4	A	843	849	Right-handed alpha

There are 11 sheets in PDB entry 6YKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	34	39	parallel
Strand 3	A	538	544	parallel
Strand 4	A	574	580	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	432	433	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	175	176	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	256	first strand
Strand 2	A	226	236	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	326	332	anti-parallel
Strand 5	A	267	270	parallel
Strand 6	A	343	346	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	256	first strand
Strand 2	A	226	236	anti-parallel
Strand 3	A	421	427	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	392	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	503	504	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	446	449	anti-parallel
Strand 3	A	496	499	anti-parallel
Strand 4	A	487	489	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	600	first strand
Strand 2	A	583	591	anti-parallel
Strand 3	A	628	634	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	600	first strand
Strand 2	A	583	591	anti-parallel
Strand 3	A	671	672	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	619	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YKK