Analysis of interatomic Contacts of Structural Units in PDB entry:
6YKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YKM entry

There are 7 chains in PDB entry 6YKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 255
B
 MET 1PHE 255
C
 MET 1PHE 255
D
 MET 1PHE 255
E
 MET 1PHE 255
F
 LYS 15ILE 55
G
 LYS 15ILE 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 6YKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 22Right-handed alpha
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
52 62Right-handed alpha
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
73 91Right-handed alpha
Helix 6
AA6
A
93 100Right-handed 310
Helix 7
AA7
A
105 117Right-handed alpha
Helix 8
AA8
A
120 160Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
174 199Right-handed alpha
Helix 11
AB2
A
199 229Right-handed alpha
Helix 12
AB3
A
233 242Right-handed alpha
Helix 13
AB4
B
6 17Right-handed alpha
Helix 14
AB5
B
17 22Right-handed alpha
Helix 15
AB6
B
32 47Right-handed alpha
Helix 16
AB7
B
52 62Right-handed alpha
Helix 17
AB8
B
63 68Right-handed alpha
Helix 18
AB9
B
73 91Right-handed alpha
Helix 19
AC1
B
92 97Right-handed 310
Helix 20
AC2
B
99 103Right-handed 310
Helix 21
AC3
B
105 113Right-handed alpha
Helix 22
AC4
B
120 129Right-handed alpha
Helix 23
AC5
B
131 152Right-handed alpha
Helix 24
AC6
B
152 168Right-handed alpha
Helix 25
AC7
B
174 198Right-handed alpha
Helix 26
AC8
B
199 229Right-handed alpha
Helix 27
AC9
B
230 232Right-handed 310
Helix 28
AD1
B
233 242Right-handed alpha
Helix 29
AD2
C
2 17Right-handed alpha
Helix 30
AD3
C
17 22Right-handed alpha
Helix 31
AD4
C
32 47Right-handed alpha
Helix 32
AD5
C
52 62Right-handed alpha
Helix 33
AD6
C
63 68Right-handed alpha
Helix 34
AD7
C
73 91Right-handed alpha
Helix 35
AD8
C
92 100Right-handed 310
Helix 36
AD9
C
105 117Right-handed alpha
Helix 37
AE1
C
120 129Right-handed alpha
Helix 38
AE2
C
132 137Right-handed alpha
Helix 39
AE3
C
137 150Right-handed alpha
Helix 40
AE4
C
152 164Right-handed alpha
Helix 41
AE5
C
164 171Right-handed alpha
Helix 42
AE6
C
174 199Right-handed alpha
Helix 43
AE7
C
199 229Right-handed alpha
Helix 44
AE8
C
230 232Right-handed 310
Helix 45
AE9
C
233 242Right-handed alpha
Helix 46
AF1
C
243 245Right-handed 310
Helix 47
AF2
D
2 22Right-handed alpha
Helix 48
AF3
D
26 31Right-handed 310
Helix 49
AF4
D
32 38Right-handed alpha
Helix 50
AF5
D
39 47Right-handed alpha
Helix 51
AF6
D
52 62Right-handed alpha
Helix 52
AF7
D
63 68Right-handed alpha
Helix 53
AF8
D
73 91Right-handed alpha
Helix 54
AF9
D
96 100Right-handed 310
Helix 55
AG1
D
105 117Right-handed alpha
Helix 56
AG2
D
120 163Right-handed alpha
Helix 57
AG3
D
165 171Right-handed alpha
Helix 58
AG4
D
176 199Right-handed alpha
Helix 59
AG5
D
199 231Right-handed alpha
Helix 60
AG6
D
233 242Right-handed alpha
Helix 61
AG7
D
243 245Right-handed 310
Helix 62
AG8
E
2 22Right-handed alpha
Helix 63
AG9
E
32 47Right-handed alpha
Helix 64
AH1
E
52 62Right-handed alpha
Helix 65
AH2
E
63 68Right-handed alpha
Helix 66
AH3
E
74 91Right-handed alpha
Helix 67
AH4
E
92 95Right-handed 310
Helix 68
AH5
E
96 101Right-handed alpha
Helix 69
AH6
E
105 116Right-handed alpha
Helix 70
AH7
E
120 133Right-handed alpha
Helix 71
AH8
E
133 143Right-handed alpha
Helix 72
AH9
E
143 152Right-handed alpha
Helix 73
AI1
E
152 171Right-handed alpha
Helix 74
AI2
E
174 179Right-handed alpha
Helix 75
AI3
E
185 197Right-handed alpha
Helix 76
AI4
E
199 229Right-handed alpha
Helix 77
AI5
E
230 232Right-handed 310
Helix 78
AI6
E
233 242Right-handed alpha
Helix 79
AI7
E
243 245Right-handed 310
Helix 80
AI8
F
16 39Right-handed alpha
Helix 81
AI9
F
45 53Right-handed alpha
Helix 82
AJ1
G
16 37Right-handed alpha
Helix 83
AJ2
G
43 53Right-handed alpha
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There are no sheets in PDB entry 6YKM
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