Analysis of interatomic Contacts of Structural Units in PDB entry:
6YKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YKV entry

There is 1 chain in PDB entry 6YKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6YKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
10 22Right-handed alpha
Helix 3
AA3
A
49 69Right-handed alpha
Helix 4
AA4
A
83 94Right-handed alpha
Helix 5
AA5
A
96 115Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
129 146Right-handed alpha
Helix 8
AA8
A
167 169Right-handed 310
Helix 9
AA9
A
195 197Right-handed 310
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
206 209Right-handed 310
Helix 12
AB3
A
213 225Right-handed alpha
Helix 13
AB4
A
238 241Right-handed 310
Helix 14
AB5
A
246 250Right-handed alpha
Helix 15
AB6
A
258 265Right-handed 310
Helix 16
AB7
A
274 281Right-handed alpha
Helix 17
AB8
A
284 297Right-handed alpha
Helix 18
AB9
A
300 304Right-handed 310
Helix 19
AC1
A
351 362Right-handed alpha
Helix 20
AC2
A
382 387Right-handed 310
Helix 21
AC3
A
396 400Right-handed 310
Helix 22
AC4
A
403 418Right-handed alpha
Helix 23
AC5
A
477 481Right-handed 310
Helix 24
AC6
A
482 486Right-handed alpha
Helix 25
AC7
A
506 511Right-handed 310
Helix 26
AC8
A
512 517Right-handed alpha
Helix 27
AC9
A
528 536Right-handed alpha
Helix 28
AD1
A
546 548Right-handed 310
Helix 29
AD2
A
549 565Right-handed alpha
Helix 30
AD3
A
601 605Right-handed 310
Helix 31
AD4
A
644 653Right-handed alpha
Helix 32
AD5
A
653 665Right-handed alpha
Helix 33
AD6
A
674 697Right-handed alpha
Helix 34
AD7
A
713 736Right-handed alpha
Helix 35
AD8
A
739 756Right-handed alpha
Helix 36
AD9
A
761 780Right-handed alpha
Helix 37
AE1
A
783 795Right-handed alpha
Helix 38
AE2
A
798 803Right-handed alpha
Helix 39
AE3
A
808 813Right-handed 310
Helix 40
AE4
A
841 848Right-handed alpha
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There are 11 sheets in PDB entry 6YKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
34 39parallel
Strand 3
A
538 544parallel
Strand 4
A
574 580parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
432 433anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
175 176anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
226 236anti-parallel
Strand 3
A
311 319anti-parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
267 270parallel
Strand 6
A
343 346anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
226 236anti-parallel
Strand 3
A
421 427anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
503 504anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
446 449anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
487 489anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 600first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
626 634anti-parallel
Strand 4
A
618 619anti-parallel
Strand 5
A
606 607anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 600first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
671 672parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
820 823first strand
Strand 2
A
871 874parallel
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