Analysis of interatomic Contacts of Structural Units in PDB entry:
6YLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YLC entry

There are 4 chains in PDB entry 6YLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 15	SER 320
B	LEU 16	PHE 321
C	PHE 14	TYR 319
D	GLY 13	PHE 321

There are 55 helices in PDB entry 6YLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	70	Right-handed alpha
Helix 2	AA2	A	115	120	Right-handed alpha
Helix 3	AA3	A	125	146	Right-handed alpha
Helix 4	AA4	A	154	156	Right-handed 310
Helix 5	AA5	A	189	193	Right-handed 310
Helix 6	AA6	A	199	205	Right-handed alpha
Helix 7	AA7	A	210	228	Right-handed alpha
Helix 8	AA8	A	236	246	Right-handed alpha
Helix 9	AA9	A	252	263	Right-handed alpha
Helix 10	AB1	A	277	282	Right-handed alpha
Helix 11	AB2	A	286	295	Right-handed alpha
Helix 12	AB3	A	306	313	Right-handed alpha
Helix 13	AB4	A	313	318	Right-handed alpha
Helix 14	AB5	B	55	72	Right-handed alpha
Helix 15	AB6	B	115	121	Right-handed alpha
Helix 16	AB7	B	125	146	Right-handed alpha
Helix 17	AB8	B	154	156	Right-handed 310
Helix 18	AB9	B	189	193	Right-handed 310
Helix 19	AC1	B	199	205	Right-handed alpha
Helix 20	AC2	B	210	228	Right-handed alpha
Helix 21	AC3	B	236	246	Right-handed alpha
Helix 22	AC4	B	252	263	Right-handed alpha
Helix 23	AC5	B	277	282	Right-handed alpha
Helix 24	AC6	B	286	295	Right-handed alpha
Helix 25	AC7	B	306	313	Right-handed alpha
Helix 26	AC8	B	313	318	Right-handed alpha
Helix 27	AC9	C	28	32	Right-handed 310
Helix 28	AD1	C	55	72	Right-handed alpha
Helix 29	AD2	C	115	120	Right-handed alpha
Helix 30	AD3	C	125	146	Right-handed alpha
Helix 31	AD4	C	154	156	Right-handed 310
Helix 32	AD5	C	189	193	Right-handed 310
Helix 33	AD6	C	199	205	Right-handed alpha
Helix 34	AD7	C	210	228	Right-handed alpha
Helix 35	AD8	C	236	246	Right-handed alpha
Helix 36	AD9	C	252	263	Right-handed alpha
Helix 37	AE1	C	277	282	Right-handed alpha
Helix 38	AE2	C	286	295	Right-handed alpha
Helix 39	AE3	C	306	313	Right-handed alpha
Helix 40	AE4	C	313	318	Right-handed alpha
Helix 41	AE5	D	28	32	Right-handed 310
Helix 42	AE6	D	55	71	Right-handed alpha
Helix 43	AE7	D	115	121	Right-handed alpha
Helix 44	AE8	D	125	146	Right-handed alpha
Helix 45	AE9	D	154	156	Right-handed 310
Helix 46	AF1	D	179	183	Right-handed 310
Helix 47	AF2	D	189	193	Right-handed 310
Helix 48	AF3	D	199	205	Right-handed alpha
Helix 49	AF4	D	210	228	Right-handed alpha
Helix 50	AF5	D	236	246	Right-handed alpha
Helix 51	AF6	D	252	263	Right-handed alpha
Helix 52	AF7	D	277	282	Right-handed alpha
Helix 53	AF8	D	286	295	Right-handed alpha
Helix 54	AF9	D	306	313	Right-handed alpha
Helix 55	AG1	D	313	318	Right-handed alpha

There are 10 sheets in PDB entry 6YLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	28	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	45	51	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	A	80	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	158	161	anti-parallel
Strand 3	A	166	169	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	174	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	28	first strand
Strand 2	B	33	39	anti-parallel
Strand 3	B	45	52	anti-parallel
Strand 4	B	103	109	anti-parallel
Strand 5	B	80	84	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	158	161	anti-parallel
Strand 3	B	166	169	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	45	52	anti-parallel
Strand 4	C	103	109	anti-parallel
Strand 5	C	80	84	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	158	161	anti-parallel
Strand 3	C	166	169	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	45	52	anti-parallel
Strand 5	D	103	109	anti-parallel
Strand 6	D	80	84	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	158	161	anti-parallel
Strand 3	D	166	169	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	174	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YLC