Analysis of interatomic Contacts of Structural Units in PDB entry:
6YLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YLE entry

There are 5 chains in PDB entry 6YLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 489
B	MET 1	HIS 489
C	GLU 4	TYR 617
D	GLU 3	LEU 619
K	ARG 245	LYS 268

There are 71 helices in PDB entry 6YLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	118	Right-handed 310
Helix 2	AA2	A	169	172	Right-handed 310
Helix 3	AA3	A	458	462	Right-handed 310
Helix 4	AA4	A	472	485	Right-handed alpha
Helix 5	AA5	B	116	118	Right-handed 310
Helix 6	AA6	B	168	173	Right-handed alpha
Helix 7	AA7	B	473	485	Right-handed alpha
Helix 8	AA8	C	7	14	Right-handed alpha
Helix 9	AA9	C	19	30	Right-handed alpha
Helix 10	AB1	C	31	36	Right-handed 310
Helix 11	AB2	C	44	58	Right-handed alpha
Helix 12	AB3	C	62	78	Right-handed alpha
Helix 13	AB4	C	78	103	Right-handed alpha
Helix 14	AB5	C	112	129	Right-handed alpha
Helix 15	AB6	C	134	139	Right-handed alpha
Helix 16	AB7	C	142	158	Right-handed alpha
Helix 17	AB8	C	160	175	Right-handed alpha
Helix 18	AB9	C	179	181	Right-handed 310
Helix 19	AC1	C	182	195	Right-handed alpha
Helix 20	AC2	C	202	216	Right-handed alpha
Helix 21	AC3	C	217	219	Right-handed 310
Helix 22	AC4	C	241	253	Right-handed alpha
Helix 23	AC5	C	254	266	Right-handed alpha
Helix 24	AC6	C	270	278	Right-handed alpha
Helix 25	AC7	C	302	308	Right-handed 310
Helix 26	AC8	C	309	326	Right-handed alpha
Helix 27	AC9	C	336	347	Right-handed alpha
Helix 28	AD1	C	364	391	Right-handed alpha
Helix 29	AD2	C	396	400	Right-handed 310
Helix 30	AD3	C	401	411	Right-handed alpha
Helix 31	AD4	C	422	427	Right-handed alpha
Helix 32	AD5	C	430	448	Right-handed alpha
Helix 33	AD6	C	454	468	Right-handed alpha
Helix 34	AD7	C	519	536	Right-handed alpha
Helix 35	AD8	C	541	562	Right-handed alpha
Helix 36	AD9	C	566	579	Right-handed alpha
Helix 37	AE1	C	587	595	Right-handed alpha
Helix 38	AE2	C	601	608	Right-handed alpha
Helix 39	AE3	D	7	16	Right-handed alpha
Helix 40	AE4	D	19	31	Right-handed alpha
Helix 41	AE5	D	38	42	Right-handed 310
Helix 42	AE6	D	44	58	Right-handed alpha
Helix 43	AE7	D	62	77	Right-handed alpha
Helix 44	AE8	D	78	102	Right-handed alpha
Helix 45	AE9	D	104	109	Right-handed alpha
Helix 46	AF1	D	112	132	Right-handed alpha
Helix 47	AF2	D	134	139	Right-handed alpha
Helix 48	AF3	D	142	157	Right-handed alpha
Helix 49	AF4	D	160	175	Right-handed alpha
Helix 50	AF5	D	176	181	Right-handed 310
Helix 51	AF6	D	182	196	Right-handed alpha
Helix 52	AF7	D	202	216	Right-handed alpha
Helix 53	AF8	D	217	219	Right-handed 310
Helix 54	AF9	D	241	252	Right-handed alpha
Helix 55	AG1	D	254	261	Right-handed alpha
Helix 56	AG2	D	262	264	Right-handed 310
Helix 57	AG3	D	272	279	Right-handed alpha
Helix 58	AG4	D	307	325	Right-handed alpha
Helix 59	AG5	D	336	349	Right-handed alpha
Helix 60	AG6	D	363	391	Right-handed alpha
Helix 61	AG7	D	396	398	Right-handed 310
Helix 62	AG8	D	399	406	Right-handed alpha
Helix 63	AG9	D	407	411	Right-handed 310
Helix 64	AH1	D	422	427	Right-handed alpha
Helix 65	AH2	D	429	445	Right-handed alpha
Helix 66	AH3	D	453	469	Right-handed alpha
Helix 67	AH4	D	521	537	Right-handed alpha
Helix 68	AH5	D	540	562	Right-handed alpha
Helix 69	AH6	D	566	579	Right-handed alpha
Helix 70	AH7	D	589	597	Right-handed alpha
Helix 71	AH8	D	601	608	Right-handed alpha

There are 20 sheets in PDB entry 6YLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	395	401	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	44	48	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	71	74	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	163	167	anti-parallel
Strand 4	A	183	185	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	198	first strand
Strand 2	A	210	216	anti-parallel
Strand 3	A	220	226	anti-parallel
Strand 4	A	249	255	anti-parallel
Strand 5	A	311	315	parallel
Strand 6	A	336	338	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	265	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	280	284	anti-parallel
Strand 4	A	340	341	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	294	296	anti-parallel
Strand 3	D	616	617	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	359	363	anti-parallel
Strand 3	A	367	372	anti-parallel
Strand 4	A	377	383	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	C	332	335	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	17	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	395	403	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	54	59	anti-parallel
Strand 4	B	71	74	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	129	134	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	154	157	anti-parallel
Strand 3	B	163	165	anti-parallel
Strand 4	B	183	185	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	210	216	anti-parallel
Strand 3	B	220	226	anti-parallel
Strand 4	B	249	255	anti-parallel
Strand 5	B	310	311	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	265	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	279	284	anti-parallel
Strand 4	B	340	343	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	288	first strand
Strand 2	B	294	296	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	337	338	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	358	363	anti-parallel
Strand 3	B	367	372	anti-parallel
Strand 4	B	378	383	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	D	332	335	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	472	first strand
Strand 2	C	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YLE