Analysis of interatomic Contacts of Structural Units in PDB entry:
6YLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YLL entry

There are 2 chains in PDB entry 6YLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14PHE 321
B
 VAL 46PHE 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6YLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 70Right-handed alpha
Helix 2
AA2
A
115 121Right-handed alpha
Helix 3
AA3
A
125 146Right-handed alpha
Helix 4
AA4
A
154 156Right-handed 310
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
210 228Right-handed alpha
Helix 8
AA8
A
236 248Right-handed alpha
Helix 9
AA9
A
252 263Right-handed alpha
Helix 10
AB1
A
264 269Right-handed alpha
Helix 11
AB2
A
277 282Right-handed alpha
Helix 12
AB3
A
286 297Right-handed alpha
Helix 13
AB4
A
306 312Right-handed alpha
Helix 14
AB5
B
59 72Right-handed alpha
Helix 15
AB6
B
115 120Right-handed alpha
Helix 16
AB7
B
125 146Right-handed alpha
Helix 17
AB8
B
154 156Right-handed 310
Helix 18
AB9
B
189 193Right-handed 310
Helix 19
AC1
B
199 205Right-handed alpha
Helix 20
AC2
B
210 228Right-handed alpha
Helix 21
AC3
B
236 248Right-handed alpha
Helix 22
AC4
B
252 261Right-handed alpha
Helix 23
AC5
B
277 281Right-handed 310
Helix 24
AC6
B
286 297Right-handed alpha
Helix 25
AC7
B
306 312Right-handed alpha
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There are 5 sheets in PDB entry 6YLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
80 84anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
166 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
176 177anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
80 84anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
158 161anti-parallel
Strand 3
B
166 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il